| Literature DB >> 34110372 |
Lucas Unger1, Alejandro Ronco-Campaña1, Philip Kitchen1, Roslyn M Bill1, Alice J Rothnie1.
Abstract
In the twelve years since styrene maleic acid (SMA) was first used to extract and purify a membrane protein within a native lipid bilayer, this technological breakthrough has provided insight into the structural and functional details of protein-lipid interactions. Most recently, advances in cryo-EM have demonstrated that SMA-extracted membrane proteins are a rich-source of structural data. For example, it has been possible to resolve the details of annular lipids and protein-protein interactions within complexes, the nature of lipids within central cavities and binding pockets, regions involved in stabilising multimers, details of terminal residues that would otherwise remain unresolved and the identification of physiologically relevant states. Functionally, SMA extraction has allowed the analysis of membrane proteins that are unstable in detergents, the characterization of an ultrafast component in the kinetics of electron transfer that was not possible in detergent-solubilised samples and quantitative, real-time measurement of binding assays with low concentrations of purified protein. While the use of SMA comes with limitations such as its sensitivity to low pH and divalent cations, its major advantage is maintenance of a protein's lipid bilayer. This has enabled researchers to view and assay proteins in an environment close to their native ones, leading to new structural and mechanistic insights.Entities:
Keywords: SMALP; cryo-electron microscopy; membrane proteins; protein complexes; protein–lipid interactions
Mesh:
Substances:
Year: 2021 PMID: 34110372 PMCID: PMC8286838 DOI: 10.1042/BST20201067
Source DB: PubMed Journal: Biochem Soc Trans ISSN: 0300-5127 Impact factor: 5.407
Examples of different proteins and expression systems successfully solubilised using polymers
| Expression organism | Membrane type | Target protein | Polymer | Reference |
|---|---|---|---|---|
| Total membrane | BmrA | SMA2000, SMA3000, SZ25010, SZ30010, DIBMA | [ | |
| ZipA | SMA2000, SMA3000, SZ25010, SZ30010, DIBMA | [ | ||
| KcsA | SMA2000 | [ | ||
| AcrB | SMA2000 | [ | ||
| bacteriorhodopsin | SZ25010 | [ | ||
| SecYEG | SMA3000 | [ | ||
| KimA | SZ30010 | [ | ||
| YnaI | DIBMA | [ | ||
| GlpG | DIBMA, SZ25010, SZ30010, SMA2000 | [ | ||
| Total membrane | Cytochrome bc1 | SZ30010 | [ | |
| Total membrane | Alternative complex III | SMA3000 | [ | |
| Thylakoid | Photosystem I | SMA1440 | [ | |
| Mitochondrial | Cytochrome oxidase | SMA EF30 | [ | |
| Total membrane | Wsc1 | SMA3000 | [ | |
| Total membrane | Adenosine 2A receptor | SMA2000 | [ | |
| Melatonin receptor | SMA2000 | [ | ||
| CD81 | SMA2000 | [ | ||
| Total membrane | hENT1/SLC29A1 | SZ30010 | [ | |
| MRP4/ABCC4 | SMA2000 | [ | ||
| α1 glycine receptor | SZ30010 | [ | ||
| Total membrane | P-glycoprotein/ABCB1 | SMA2000 | [ | |
| HEK293T cells | Total membrane | Dopamine receptor | SMA3000 | [ |
| ABCG2 | SMA2000 | [ | ||
| Acid-sensing ion channel isoform 1 | SZ30010 | [ | ||
| Hela cells | Whole cells | Total membrane solubilisaton | SZ30010 | [ |
| Red blood cells | Red blood cell ghosts | Rh complexes | SMA3000 | [ |
| Jurkat cells | Total membrane | Numerous cell surface proteins | SMA3000 | [ |
| Hamster brain | Tissue homogenate | Prion protein | SZ25010, SZ30010 | [ |
| Chloroplast thylakoid | Total protein | SMA1440, SZ25010, SZ30010, SMA2000 | [ | |
| Total membrane | Dhurrin catalysing metabolon | SMA2000 | [ |
SMA2000, SMA3000, SMA EF30 and SMA1440 polymers are from Cray Valley. SZ30010 and SZ25010 are from Polyscope. DIBMA is from BASF. SMA3000, SMA EF30 and SZ25010 have a styrene:maleic acid ratio of ∼3 : 1 whilst SMA2000 and SZ30010 have a ratio of 2 : 1 and 2.3 : 1, respectively. SMA1440 is a partially esterified variant of SMA [27]. DIBMA is a 1 : 1 alternating polymer of diisobutylene and maleic acid.
Figure 1.Example structures obtained using polymer extracted proteins.
(A) Haloquadratum Walsbyi bacteriorhodopsin (PDB ID 5ITC) [31]. (B) Alternative complex III (PDB ID 6BTM) [38]. (C) AcrB (PDB ID 6BAJ) [21]. (D) KimA (PDB ID 6S3K) [33]. (E) ASIC1 in the low pH desensitized state (PDB ID 6VTK) [50]. (F) YnaI in the closed state (PDB ID 6ZYD) [34]. (G) Glycine receptor (GlyR) with bound glycine (purple) in the super-open state (PDB ID 6PM4) [46].
Figure 2.Polymer extraction of membrane proteins retains interactions between proteins and lipids which is important for both protein structure and function.
Side view structure of YnaI (PDB ID 6ZYD) [34].Top view structure of GlyR showing bound partial agonist taurine (space filling grey) (PDB ID 6PM0) [46], alongside representative images of various types of functional assays. Bottom view of AcrB trimer showing central lipid filled cavity (space filling grey) (PDB ID 6BAJ) [21], alongside a representative mass spectrum for lipids co-purified with a protein from yeast. Structural images made using Mol*[79].