Literature DB >> 34110369

Detergent-free systems for structural studies of membrane proteins.

Youzhong Guo1.   

Abstract

Membrane proteins play vital roles in living organisms, serving as targets for most currently prescribed drugs. Membrane protein structural biology aims to provide accurate structural information to understand their mechanisms of action. The advance of membrane protein structural biology has primarily relied on detergent-based methods over the past several decades. However, detergent-based approaches have significant drawbacks because detergents often damage the native protein-lipid interactions, which are often crucial for maintaining the natural structure and function of membrane proteins. Detergent-free methods recently have emerged as alternatives with a great promise, e.g. for high-resolution structure determinations of membrane proteins in their native cell membrane lipid environments. This minireview critically examines the current status of detergent-free methods by a comparative analysis of five groups of membrane protein structures determined using detergent-free and detergent-based methods. This analysis reveals that current detergent-free systems, such as the styrene-maleic acid lipid particles (SMALP), the diisobutyl maleic acid lipid particles (DIBMALP), and the cycloalkane-modified amphiphile polymer (CyclAPol) technologies are not better than detergent-based approaches in terms of maintenance of native cell membrane lipids on the transmembrane domain and high-resolution structure determination. However, another detergent-free technology, the native cell membrane nanoparticles (NCMN) system, demonstrated improved maintenance of native cell membrane lipids with the studied membrane proteins, and produced particles that were suitable for high-resolution structural analysis. The ongoing development of new membrane-active polymers and their optimization will facilitate the maturation of these new detergent-free systems.
© 2021 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.

Entities:  

Keywords:  CyclAPol; DIBMA; NCMN; SMALP

Mesh:

Substances:

Year:  2021        PMID: 34110369      PMCID: PMC8276625          DOI: 10.1042/BST20201080

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  74 in total

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Authors:  R M Garavito; S Ferguson-Miller
Journal:  J Biol Chem       Date:  2001-06-29       Impact factor: 5.157

2.  Membrane protein stability can be compromised by detergent interactions with the extramembranous soluble domains.

Authors:  Zhengrong Yang; Chi Wang; Qingxian Zhou; Jianli An; Ellen Hildebrandt; Luba A Aleksandrov; John C Kappes; Lawrence J DeLucas; John R Riordan; Ina L Urbatsch; John F Hunt; Christie G Brouillette
Journal:  Protein Sci       Date:  2014-05-03       Impact factor: 6.725

3.  Structure and activity of lipid bilayer within a membrane-protein transporter.

Authors:  Weihua Qiu; Ziao Fu; Guoyan G Xu; Robert A Grassucci; Yan Zhang; Joachim Frank; Wayne A Hendrickson; Youzhong Guo
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-03       Impact factor: 11.205

4.  Effect of polymer charge on functional reconstitution of membrane proteins in polymer nanodiscs.

Authors:  Thirupathi Ravula; Nathaniel Z Hardin; Jia Bai; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  Chem Commun (Camb)       Date:  2018-08-23       Impact factor: 6.222

5.  DIBMA nanodiscs keep α-synuclein folded.

Authors:  Regina Adão; Pedro F Cruz; Daniela C Vaz; Fátima Fonseca; Jannik Nedergaard Pedersen; Frederico Ferreira-da-Silva; Rui M M Brito; Carlos H I Ramos; Daniel Otzen; Sandro Keller; Margarida Bastos
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Review 6.  How do mechanosensitive channels sense membrane tension?

Authors:  Tim Rasmussen
Journal:  Biochem Soc Trans       Date:  2016-08-15       Impact factor: 5.407

Review 7.  Perturbations of Native Membrane Protein Structure in Alkyl Phosphocholine Detergents: A Critical Assessment of NMR and Biophysical Studies.

Authors:  Christophe Chipot; François Dehez; Jason R Schnell; Nicole Zitzmann; Eva Pebay-Peyroula; Laurent J Catoire; Bruno Miroux; Edmund R S Kunji; Gianluigi Veglia; Timothy A Cross; Paul Schanda
Journal:  Chem Rev       Date:  2018-02-28       Impact factor: 60.622

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Authors:  S J Singer; G L Nicolson
Journal:  Science       Date:  1972-02-18       Impact factor: 47.728

9.  Interactions of a Bacterial RND Transporter with a Transmembrane Small Protein in a Lipid Environment.

Authors:  Dijun Du; Arthur Neuberger; Mona Wu Orr; Catherine E Newman; Pin-Chia Hsu; Firdaus Samsudin; Andrzej Szewczak-Harris; Leana M Ramos; Mekdes Debela; Syma Khalid; Gisela Storz; Ben F Luisi
Journal:  Structure       Date:  2020-04-28       Impact factor: 5.006

10.  Mechanism of gating and partial agonist action in the glycine receptor.

Authors:  Jie Yu; Hongtao Zhu; Remigijus Lape; Timo Greiner; Juan Du; Wei Lü; Lucia Sivilotti; Eric Gouaux
Journal:  Cell       Date:  2021-02-09       Impact factor: 41.582

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  3 in total

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Authors:  Sarah J Piper; Rachel M Johnson; Denise Wootten; Patrick M Sexton
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

2.  Analysis of the oligomeric state of mycobacterial membrane protein large 3 and its interaction with SQ109 with native cell membrane nanoparticles system.

Authors:  Weihua Qiu; Youzhong Guo
Journal:  Biochim Biophys Acta Biomembr       Date:  2021-10-13       Impact factor: 4.019

3.  Cryo-EM Structure of Mechanosensitive Channel YnaI Using SMA2000: Challenges and Opportunities.

Authors:  Claudio Catalano; Danya Ben-Hail; Weihua Qiu; Paul Blount; Amedee des Georges; Youzhong Guo
Journal:  Membranes (Basel)       Date:  2021-10-31
  3 in total

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