Literature DB >> 29488756

Perturbations of Native Membrane Protein Structure in Alkyl Phosphocholine Detergents: A Critical Assessment of NMR and Biophysical Studies.

Christophe Chipot1,2,3, François Dehez1,2, Jason R Schnell4, Nicole Zitzmann4, Eva Pebay-Peyroula5, Laurent J Catoire6,7,8, Bruno Miroux6,7,8, Edmund R S Kunji9, Gianluigi Veglia10, Timothy A Cross11, Paul Schanda5.   

Abstract

Membrane proteins perform a host of vital cellular functions. Deciphering the molecular mechanisms whereby they fulfill these functions requires detailed biophysical and structural investigations. Detergents have proven pivotal to extract the protein from its native surroundings. Yet, they provide a milieu that departs significantly from that of the biological membrane, to the extent that the structure, the dynamics, and the interactions of membrane proteins in detergents may considerably vary, as compared to the native environment. Understanding the impact of detergents on membrane proteins is, therefore, crucial to assess the biological relevance of results obtained in detergents. Here, we review the strengths and weaknesses of alkyl phosphocholines (or foscholines), the most widely used detergent in solution-NMR studies of membrane proteins. While this class of detergents is often successful for membrane protein solubilization, a growing list of examples points to destabilizing and denaturing properties, in particular for α-helical membrane proteins. Our comprehensive analysis stresses the importance of stringent controls when working with this class of detergents and when analyzing the structure and dynamics of membrane proteins in alkyl phosphocholine detergents.

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Year:  2018        PMID: 29488756      PMCID: PMC5896743          DOI: 10.1021/acs.chemrev.7b00570

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  441 in total

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Authors:  R M Garavito; S Ferguson-Miller
Journal:  J Biol Chem       Date:  2001-06-29       Impact factor: 5.157

2.  Probing ground and excited states of phospholamban in model and native lipid membranes by magic angle spinning NMR spectroscopy.

Authors:  Martin Gustavsson; Nathaniel J Traaseth; Gianluigi Veglia
Journal:  Biochim Biophys Acta       Date:  2011-08-03

3.  Structural features of the C8 antiviral peptide in a membrane-mimicking environment.

Authors:  Mario Scrima; Sara Di Marino; Manuela Grimaldi; Federica Campana; Giuseppe Vitiello; Stefano Piotto Piotto; Gerardino D'Errico; Anna Maria D'Ursi
Journal:  Biochim Biophys Acta       Date:  2013-12-22

4.  Amphipols from A to Z.

Authors:  J-L Popot; T Althoff; D Bagnard; J-L Banères; P Bazzacco; E Billon-Denis; L J Catoire; P Champeil; D Charvolin; M J Cocco; G Crémel; T Dahmane; L M de la Maza; C Ebel; F Gabel; F Giusti; Y Gohon; E Goormaghtigh; E Guittet; J H Kleinschmidt; W Kühlbrandt; C Le Bon; K L Martinez; M Picard; B Pucci; J N Sachs; C Tribet; C van Heijenoort; F Wien; F Zito; M Zoonens
Journal:  Annu Rev Biophys       Date:  2011       Impact factor: 12.981

5.  Gauging a hydrocarbon ruler by an intrinsic exciton probe.

Authors:  M Adil Khan; Chris Neale; Catherine Michaux; Régis Pomès; Gilbert G Privé; Robert W Woody; Russell E Bishop
Journal:  Biochemistry       Date:  2007-03-22       Impact factor: 3.162

Review 6.  Relating structure and function of viral membrane-spanning miniproteins.

Authors:  Stanley J Opella
Journal:  Curr Opin Virol       Date:  2015-06-06       Impact factor: 7.090

7.  Applications of phospholipid bilayer nanodiscs in the study of membranes and membrane proteins.

Authors:  Abhinav Nath; William M Atkins; Stephen G Sligar
Journal:  Biochemistry       Date:  2007-01-31       Impact factor: 3.162

Review 8.  A Review of the Human Sigma-1 Receptor Structure.

Authors:  Felipe Ossa; Jason R Schnell; José Luis Ortega-Roldan
Journal:  Adv Exp Med Biol       Date:  2017       Impact factor: 2.622

9.  Quality control in eukaryotic membrane protein overproduction.

Authors:  Jennifer A Thomas; Christopher G Tate
Journal:  J Mol Biol       Date:  2014-12-12       Impact factor: 5.469

Review 10.  Structural and Functional Properties of the Hepatitis C Virus p7 Viroporin.

Authors:  Vanesa Madan; Ralf Bartenschlager
Journal:  Viruses       Date:  2015-08-06       Impact factor: 5.048

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  49 in total

1.  Oligomeric Structure and Three-Dimensional Fold of the HIV gp41 Membrane-Proximal External Region and Transmembrane Domain in Phospholipid Bilayers.

Authors:  Byungsu Kwon; Myungwoon Lee; Alan J Waring; Mei Hong
Journal:  J Am Chem Soc       Date:  2018-06-22       Impact factor: 15.419

2.  A serine in the first transmembrane domain of the human E3 ubiquitin ligase MARCH9 is critical for down-regulation of its protein substrates.

Authors:  Cyrus Tan; Eamon F X Byrne; Casey Ah-Cann; Melissa J Call; Matthew E Call
Journal:  J Biol Chem       Date:  2018-12-15       Impact factor: 5.157

3.  Inactivation in the potassium channel KcsA.

Authors:  Yunyao Xu; Ann E McDermott
Journal:  J Struct Biol X       Date:  2019-06-12

4.  Biophysical studies of HIV-1 glycoprotein-41 interactions with peptides and small molecules - Effect of lipids and detergents.

Authors:  Guangyan Zhou; Shidong Chu; Aditya Kohli; Francis C Szoka; Miriam Gochin
Journal:  Biochim Biophys Acta Gen Subj       Date:  2020-09-02       Impact factor: 3.770

5.  The Fluidity of Phosphocholine and Maltoside Micelles and the Effect of CHAPS.

Authors:  Marissa Kieber; Tomihiro Ono; Ryan C Oliver; Sarah B Nyenhuis; D Peter Tieleman; Linda Columbus
Journal:  Biophys J       Date:  2019-03-30       Impact factor: 4.033

Review 6.  Solution NMR: A powerful tool for structural and functional studies of membrane proteins in reconstituted environments.

Authors:  Robbins Puthenveetil; Olga Vinogradova
Journal:  J Biol Chem       Date:  2019-09-24       Impact factor: 5.157

7.  Structure and Function in Antimicrobial Piscidins: Histidine Position, Directionality of Membrane Insertion, and pH-Dependent Permeabilization.

Authors:  Mihaela Mihailescu; Mirco Sorci; Jolita Seckute; Vitalii I Silin; Janet Hammer; B Scott Perrin; Jorge I Hernandez; Nedzada Smajic; Akritee Shrestha; Kimberly A Bogardus; Alexander I Greenwood; Riqiang Fu; Jack Blazyk; Richard W Pastor; Linda K Nicholson; Georges Belfort; Myriam L Cotten
Journal:  J Am Chem Soc       Date:  2019-06-13       Impact factor: 15.419

8.  Fully hydrophobic HIV gp41 adopts a hemifusion-like conformation in phospholipid bilayers.

Authors:  Myungwoon Lee; Chloe A Morgan; Mei Hong
Journal:  J Biol Chem       Date:  2019-08-13       Impact factor: 5.157

9.  De novo resonance assignment of the transmembrane domain of LR11/SorLA in E. coli membranes.

Authors:  Xiaoyan Ding; Riqiang Fu; Fang Tian
Journal:  J Magn Reson       Date:  2019-11-01       Impact factor: 2.229

10.  Magnetic Alignment of Polymer Nanodiscs Probed by Solid-State NMR Spectroscopy.

Authors:  Thirupathi Ravula; JaeWoong Kim; Dong-Kuk Lee; Ayyalusamy Ramamoorthy
Journal:  Langmuir       Date:  2020-01-30       Impact factor: 3.882

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