| Literature DB >> 34094333 |
Sarah L Kidd1, Elaine Fowler1, Till Reinhardt1, Thomas Compton1, Natalia Mateu1, Hector Newman2,3, Dom Bellini2, Romain Talon3,4, Joseph McLoughlin5, Tobias Krojer6, Anthony Aimon3,4, Anthony Bradley3, Michael Fairhead4, Paul Brear5, Laura Díaz-Sáez4,6, Katherine McAuley3, Hannah F Sore1, Andrew Madin7, Daniel H O'Donovan8, Kilian V M Huber4,6, Marko Hyvönen5, Frank von Delft3,4,9, Christopher G Dowson2, David R Spring1.
Abstract
Organic synthesis underpins the evolution of weak fragment hits into potent lead compounds. Deficiencies within current screening collections often result in the requirement of significant synthetic investment to enable multidirectional fragment growth, limiting the efficiency of the hit evolution process. Diversity-oriented synthesis (DOS)-derived fragment libraries are constructed in an efficient and modular fashion and thus are well-suited to address this challenge. To demonstrate the effective nature of such libraries within fragment-based drug discovery, we herein describe the screening of a 40-member DOS library against three functionally distinct biological targets using X-Ray crystallography. Firstly, we demonstrate the importance for diversity in aiding hit identification with four fragment binders resulting from these efforts. Moreover, we also exemplify the ability to readily access a library of analogues from cheap commercially available materials, which ultimately enabled the exploration of a minimum of four synthetic vectors from each molecule. In total, 10-14 analogues of each hit were rapidly accessed in three to six synthetic steps. Thus, we showcase how DOS-derived fragment libraries enable efficient hit derivatisation and can be utilised to remove the synthetic limitations encountered in early stage fragment-based drug discovery. This journal is © The Royal Society of Chemistry.Entities:
Year: 2020 PMID: 34094333 PMCID: PMC8162264 DOI: 10.1039/d0sc01232g
Source DB: PubMed Journal: Chem Sci ISSN: 2041-6520 Impact factor: 9.825
Fig. 1Demonstration of the utility of DOS libraries in X-ray based fragment screening and the ability to enable rapid analogue generation along multiple 3-D vectors around initial hits in a facile manner. See ref. 27 for chemistry towards the library.
Fig. 2Initial hit compound 1 bound to PBP3, highlighted vectors suitable for diversification and the analogues synthesised to validate the initial hit.
Scheme 1Synthetic route to analogues of the initial PBP3 hit 1 in five steps through key amine of type 15.
Fig. 3X-ray structure of 6 bound to PBP3 with conserved H-bonds highlighted.
Fig. 4Initial hit compound 19 bound to CFI25, highlighted vectors suitable for diversification and the analogues synthesised to validate the initial hit.
Scheme 2A divergent scheme was harnessed to access analogues 20–33 starting from the key quaternary amine intermediate of type 15.
Fig. 5(A) Hits that bound in allosteric site, 28 = green sticks, 29 = cyan sticks, 32 = yellow sticks and (B) 31 was found to bind in the substrate channel.
Fig. 6Initial hit compound 40 bound to activin A, highlighted vectors suitable for diversification and the analogues (41–52) synthesised to validate initial hit.
Scheme 3Two synthetic strategies to access analogues of 40, (A) via key amine 15, (B) from sarcosine methyl ester hydrochloride.
Fig. 7Follow-up analogue 42 bound to activin A with conserved H-bond to Trp28 highlighted.