Literature DB >> 27677860

Alternative polyadenylation of mRNA precursors.

Bin Tian1, James L Manley2.   

Abstract

Alternative polyadenylation (APA) is an RNA-processing mechanism that generates distinct 3' termini on mRNAs and other RNA polymerase II transcripts. It is widespread across all eukaryotic species and is recognized as a major mechanism of gene regulation. APA exhibits tissue specificity and is important for cell proliferation and differentiation. In this Review, we discuss the roles of APA in diverse cellular processes, including mRNA metabolism, protein diversification and protein localization, and more generally in gene regulation. We also discuss the molecular mechanisms underlying APA, such as variation in the concentration of core processing factors and RNA-binding proteins, as well as transcription-based regulation.

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Year:  2016        PMID: 27677860      PMCID: PMC5483950          DOI: 10.1038/nrm.2016.116

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  178 in total

1.  Identification of alternate polyadenylation sites and analysis of their tissue distribution using EST data.

Authors:  E Beaudoing; D Gautheret
Journal:  Genome Res       Date:  2001-09       Impact factor: 9.043

2.  Transcription termination by nuclear RNA polymerases.

Authors:  Patricia Richard; James L Manley
Journal:  Genes Dev       Date:  2009-06-01       Impact factor: 11.361

3.  Molecular architecture of the human pre-mRNA 3' processing complex.

Authors:  Yongsheng Shi; Dafne Campigli Di Giammartino; Derek Taylor; Ali Sarkeshik; William J Rice; John R Yates; Joachim Frank; James L Manley
Journal:  Mol Cell       Date:  2009-02-13       Impact factor: 17.970

4.  Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites.

Authors:  Rickard Sandberg; Joel R Neilson; Arup Sarma; Phillip A Sharp; Christopher B Burge
Journal:  Science       Date:  2008-06-20       Impact factor: 47.728

5.  Differential genome-wide profiling of tandem 3' UTRs among human breast cancer and normal cells by high-throughput sequencing.

Authors:  Yonggui Fu; Yu Sun; Yuxin Li; Jie Li; Xingqiang Rao; Chong Chen; Anlong Xu
Journal:  Genome Res       Date:  2011-04-07       Impact factor: 9.043

6.  RNA recognition by the human polyadenylation factor CstF.

Authors:  Y Takagaki; J L Manley
Journal:  Mol Cell Biol       Date:  1997-07       Impact factor: 4.272

7.  Transcriptional activators enhance polyadenylation of mRNA precursors.

Authors:  Takashi Nagaike; Charlotte Logan; Ikuko Hotta; Orit Rozenblatt-Rosen; Matthew Meyerson; James L Manley
Journal:  Mol Cell       Date:  2011-02-18       Impact factor: 17.970

8.  Systematic variation in mRNA 3'-processing signals during mouse spermatogenesis.

Authors:  Donglin Liu; J Michael Brockman; Brinda Dass; Lucie N Hutchins; Priyam Singh; John R McCarrey; Clinton C MacDonald; Joel H Graber
Journal:  Nucleic Acids Res       Date:  2006-12-08       Impact factor: 16.971

9.  piRNA-directed cleavage of meiotic transcripts regulates spermatogenesis.

Authors:  Wee Siong Sho Goh; Ilaria Falciatori; Oliver H Tam; Ralph Burgess; Oliver Meikar; Noora Kotaja; Molly Hammell; Gregory J Hannon
Journal:  Genes Dev       Date:  2015-05-15       Impact factor: 11.361

10.  CPSF30 and Wdr33 directly bind to AAUAAA in mammalian mRNA 3' processing.

Authors:  Serena L Chan; Ina Huppertz; Chengguo Yao; Lingjie Weng; James J Moresco; John R Yates; Jernej Ule; James L Manley; Yongsheng Shi
Journal:  Genes Dev       Date:  2014-10-09       Impact factor: 11.361

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  327 in total

1.  Recent molecular insights into canonical pre-mRNA 3'-end processing.

Authors:  Yadong Sun; Keith Hamilton; Liang Tong
Journal:  Transcription       Date:  2020-06-11

Review 2.  Altered RNA Processing in Cancer Pathogenesis and Therapy.

Authors:  Esther A Obeng; Connor Stewart; Omar Abdel-Wahab
Journal:  Cancer Discov       Date:  2019-10-14       Impact factor: 39.397

3.  IMP1 3' UTR shortening enhances metastatic burden in colorectal cancer.

Authors:  Sarah F Andres; Kathy N Williams; Jacqueline B Plesset; Jeffrey J Headd; Rei Mizuno; Priya Chatterji; Ashley A Lento; Andres J Klein-Szanto; Rosemarie Mick; Kathryn E Hamilton; Anil K Rustgi
Journal:  Carcinogenesis       Date:  2019-06-10       Impact factor: 4.944

4.  Transcriptome Analyses of FY Mutants Reveal Its Role in mRNA Alternative Polyadenylation.

Authors:  Zhibo Yu; Juncheng Lin; Qingshun Quinn Li
Journal:  Plant Cell       Date:  2019-08-19       Impact factor: 11.277

5.  A Deep Neural Network for Predicting and Engineering Alternative Polyadenylation.

Authors:  Nicholas Bogard; Johannes Linder; Alexander B Rosenberg; Georg Seelig
Journal:  Cell       Date:  2019-06-06       Impact factor: 41.582

6.  Suboptimal RNA-RNA interaction limits U1 snRNP inhibition of canonical mRNA 3' processing.

Authors:  Junjie Shi; Yanhui Deng; Shanshan Huang; Chunliu Huang; Jinkai Wang; Andy Peng Xiang; Chengguo Yao
Journal:  RNA Biol       Date:  2019-07-07       Impact factor: 4.652

Review 7.  Co-Transcriptional RNA Processing in Plants: Exploring from the Perspective of Polyadenylation.

Authors:  Jing Yang; Ying Cao; Ligeng Ma
Journal:  Int J Mol Sci       Date:  2021-03-24       Impact factor: 5.923

Review 8.  Faulty RNA splicing: consequences and therapeutic opportunities in brain and muscle disorders.

Authors:  Vittoria Pagliarini; Piergiorgio La Rosa; Claudio Sette
Journal:  Hum Genet       Date:  2017-04-22       Impact factor: 4.132

9.  Codon usage biases co-evolve with transcription termination machinery to suppress premature cleavage and polyadenylation.

Authors:  Zhipeng Zhou; Yunkun Dang; Mian Zhou; Haiyan Yuan; Yi Liu
Journal:  Elife       Date:  2018-03-16       Impact factor: 8.140

10.  mountainClimber Identifies Alternative Transcription Start and Polyadenylation Sites in RNA-Seq.

Authors:  Ashley A Cass; Xinshu Xiao
Journal:  Cell Syst       Date:  2019-09-18       Impact factor: 10.304

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