| Literature DB >> 34051442 |
Salvatore Gitto1, Renato Cuocolo2, Alessio Annovazzi3, Vincenzo Anelli4, Marzia Acquasanta5, Antonino Cincotta6, Domenico Albano7, Vito Chianca8, Virginia Ferraresi9, Carmelo Messina5, Carmine Zoccali10, Elisabetta Armiraglio11, Antonina Parafioriti11, Rosa Sciuto3, Alessandro Luzzati5, Roberto Biagini10, Massimo Imbriaco12, Luca Maria Sconfienza13.
Abstract
BACKGROUND: Clinical management ranges from surveillance or curettage to wide resection for atypical to higher-grade cartilaginous tumours, respectively. Our aim was to investigate the performance of computed tomography (CT) radiomics-based machine learning for classification of atypical cartilaginous tumours and higher-grade chondrosarcomas of long bones.Entities:
Keywords: Artificial intelligence; Chondrosarcoma; Machine learning; Multidetector computed tomography
Mesh:
Year: 2021 PMID: 34051442 PMCID: PMC8170113 DOI: 10.1016/j.ebiom.2021.103407
Source DB: PubMed Journal: EBioMedicine ISSN: 2352-3964 Impact factor: 8.143
Fig. 1Flowchart of patient selection. ACT, atypical cartilaginous tumours.
Demographics and clinical data. Age is presented as median and interquartile (1st-3rd) range.
| Centre 1 | Centre 2 | |
|---|---|---|
| 52 (45-65) years | 57 (46-69) years | |
| Men: n=30 | Men: n=13 | |
| Femur: n=40 | Femur: n=21 | |
| G1: n=55 | G1: n=16 | |
Wide resection was performed in n=8 G1/atypical cartilaginous tumours from centre 1 in case of specific anatomic location (like fibular head) or to prevent the risk of biopsy sampling errors. It was performed in all cases from centre 2 to prevent the risk of biopsy sampling errors, as per routine procedure.
Curettage was initially performed in n=5 G2 chondrosarcomas from centre 2, as preoperative biopsy downgraded the lesions as G1. A second surgery consisting of wide resection was thus required.
Fig. 2Radiomics-based machine learning workflow pipeline.
Fig. 3Feature dimensionality reduction. A Feature selection process was performed exclusively using the training cohort data and included stability assessment as well as variance and intercorrelation analyses. The rate of stable features was 30% (n=275), none of which had low variance. Removing all inter-correlated features yielded a dataset of 26 non-colinear features. B The five features with the highest gain ratio were selected and included.
Confusion matrix for the training and external test cohorts.
| Predicted class | ||||
|---|---|---|---|---|
| ACT | CS | |||
| ACT | 46 | 9 | ||
| CS | 12 | 43 | ||
| ACT | 13 | 3 | ||
| CS | 6 | 14 | ||
ACT, atypical cartilaginous tumour; CS, higher-grade chondrosarcoma.
Classifier accuracy metrics weighted average and by class in both the training and external test cohorts.
| Cohort | Class | TP rate | FP rate | Precision | Recall | F-score | ROC | PRC |
|---|---|---|---|---|---|---|---|---|
| 0.836 | 0.218 | 0.793 | 0.836 | 0.814 | 0.891 | 0.876 | ||
| 0.782 | 0.164 | 0.827 | 0.782 | 0.804 | 0.891 | 0.915 | ||
| 0.809 | 0.191 | 0.810 | 0.809 | 0.809 | 0.891 | 0.895 | ||
| 0.813 | 0.300 | 0.684 | 0.813 | 0.743 | 0.784 | 0.661 | ||
| 0.700 | 0.188 | 0.824 | 0.700 | 0.757 | 0.784 | 0.857 | ||
| 0.750 | 0.238 | 0.762 | 0.750 | 0.751 | 0.784 | 0.770 |
ACT, atypical cartilaginous tumour; CS, higher-grade chondrosarcoma; FP, false positive; PRC, precision-recall curve; ROC, receiver operator curve; TP, true positive; WA, weighted average.
Fig. 4ROC curve showing the classifier performance in the external test cohort.
Fig. 5Precision-recall curve illustrating the classifier performance for G2-G4 chondrosarcoma identification in the external test cohort.
Fig. 6Calibration curve in the external test cohort. The data is divided into bins, with the y-axis representing the distribution of positive cases in each bin while the x-axis the probability as predicted by the classifier. The closer the resulting calibration curve is to the reference line. the better the model's predictions reflect the actual class distribution in the dataset.
Qualitative imaging assessment performed by the experienced radiologist. Lesion diameter is presented as median and interquartile (1st-3rd) range. Other variables are presented as proportions.
| Class | Bone expansion | Cortical breakthrough | Aggressive periostitis | Soft-tissue mass | Maximum diameter | Correct diagnosis |
|---|---|---|---|---|---|---|
| 1/16 | 3/16 | 1/16 | 0/16 | 45 (31-54) mm | 12/16 | |
| 13/20 | 16/20 | 14/20 | 13/20 | 91 (59-124) mm | 17/20 | |
| 14/36 | 19/36 | 15/36 | 13/36 | 60 (42-100) mm | 29/36 |
ACT, atypical cartilaginous tumour; CS, higher-grade chondrosarcoma