| Literature DB >> 34037732 |
Iris Cohn1,2,3, Roozbeh Manshaei2, Eriskay Liston3, John B A Okello3, Reem Khan3, Meredith R Curtis3, Abby J Krupski1, Rebekah K Jobling3,4,5, Kelsey Kalbfleisch3,4, Tara A Paton6, Miriam S Reuter3,6,7,8, Robin Z Hayeems9,10, Ruud H J Verstegen1,11,12, Aaron Goldman13, Raymond H Kim3,4,14, Shinya Ito1,2,12.
Abstract
Importance: Pharmacogenomic (PGx) testing provides preemptive pharmacotherapeutic guidance regarding the lack of therapeutic benefit or adverse drug reactions of PGx targeted drugs. Pharmacogenomic information is of particular value among children with complex medical conditions who receive multiple medications and are at higher risk of developing adverse drug reactions.Entities:
Mesh:
Year: 2021 PMID: 34037732 PMCID: PMC8155824 DOI: 10.1001/jamanetworkopen.2021.10446
Source DB: PubMed Journal: JAMA Netw Open ISSN: 2574-3805
Drug-Gene Interactions and Pharmacogenomic Variants Identified by Targeted Genotyping
| Drug | Indication | Gene | SNV testing panel |
|---|---|---|---|
| Amoxapine, aripiprazole, atomoxetine, brexipiprazole, desipramine, fluvoxamine, haloperidol, nortriptyline, paroxetine, quinidine/dextrometorphan, perphenazine, pimozidine, protriptyline, tetrabenazine, thioridazine, valbenazine, venlafaxine, vortioxetine, and zuclopenthixol | Psychiatric disorders | rs16947, rs1135840, rs35742686, rs3892097, rs5030655, rs5030867, rs5030865, rs5030656, rs1065852, rs201377835, rs5030864, rs5030862, rs5030865, rs72549357, rs28371706, 4133dupGTGCCCACT, rs72549353, rs72549354, rs59421388, rs28371735, rs28371725, CNV | |
| Codeine, hydrocodone, oxycodone, and tramadol | Pain | ||
| Ondansetron, metoclopramide, and tropisetron | Gastrointestinal disorders | ||
| Flecainide and propafenone | Antiarrhythmics | ||
| Metoprolol | β blocker | ||
| Tolteridone | Bladder disorders | ||
| Eliglustat | Gaucher disease | ||
| Amitriptyline, clomipramine, doxepin, imipramine, and trimipramine | Psychiatric disorders | rs4244285, rs498689, rs28399504, rs56337013, rs72552267, rs72558186, rs41291556, rs12248560 | |
| Clopidogrel | Antiplatelet agent | rs4244285, rs498689, rs28399504, rs56337013, rs72552267, rs72558186, rs41291556, rs12248560 | |
| Citalopram, clobazam, escitalopram, and sertraline | Psychiatric disorders | ||
| Dexlansoprazole, lansoprazole, omeprazole, and pantoprazole | Gastrointestinal disorders | ||
| Voriconazole | Infectious diseases | ||
| Carisoprodol | Pain | ||
| Warfarin | Anticoagulant | rs9923231 (1639 G>A), | |
| Phenytoin, siponimod, and lesinurad | Neurologic disorders | rs1799853, rs1057910, rs56165452, rs28371686, rs9332131, rs7900194, rs28371685, rs9332239, rs72558187, rs72558190 | |
| Celecoxib, flurbiprofen, ibuprofen, and meloxicam piroxicam | Pain | ||
| Dronabinol | Antiemetic | ||
| Azathioprine, mercaptopurine, and thioguanine | Autoimmune disorders and cancer | rs1142345, rs1800460, rs1800462, rs1800584 | |
| Tacrolimus | Organ transplantation | rs28365083, rs776746, rs10264272, rs41303343 |
Abbreviations: CNV, copy number variant; SNV, single nucleotide variant.
Clinical Service Referrals for Pharmacogenomic Consultation
| Cohort | Service | Patients referred, No. (N = 172) |
|---|---|---|
| Point-of-care | Cardiology | 1 |
| Point-of-care | Cardiac transplant | 10 |
| Point-of-care | Gastroenterology | 12 |
| Point-of-care | Genetics | 3 |
| Point-of-care | Hepatology | 1 |
| Point-of-care | Nephrology | 1 |
| Point-of-care | Neurology | 10 |
| Point-of-care | Psychiatry | 18 |
| Point-of-care | Rheumatology | 1 |
| Preemptive | Cardiac genome clinic | 115 |
The point-of-care cohort comprised 57 patients recruited from the consultation clinic who received the targeted drug–guided approach. The preemptive cohort comprised 115 patients recruited from the cardiac genome clinic who received the whole-genome sequencing–guided approach.
Figure. Patient Flowchart and Overview of Pharmacogenomic Data Integration
PGx indicates pharmacogenomic; WGS, whole-genome sequencing.
aNon-*1 haplotype in CYP2C9, CYP2C19, CYP2D6, and TPMT; VKORC1 1639 G>A (GA variant in the presence of CYP2C9*1/*1 is defined as a reference); and non-*3 haplotype in CYP3A5.