Literature DB >> 34022963

Bacterial diversity and predicted enzymatic function in a multipurpose surface water system - from wastewater effluent discharges to drinking water production.

Ananda Tiwari1, Anna-Maria Hokajärvi2, Jorge Santo Domingo3, Michael Elk3,4, Balamuralikrishna Jayaprakash2, Hodon Ryu3, Sallamaari Siponen2, Asko Vepsäläinen2, Ari Kauppinen2,5, Osmo Puurunen6, Aki Artimo6, Noora Perkola7, Timo Huttula8, Ilkka T Miettinen2, Tarja Pitkänen2,9.   

Abstract

BACKGROUND: Rivers and lakes are used for multiple purposes such as for drinking water (DW) production, recreation, and as recipients of wastewater from various sources. The deterioration of surface water quality with wastewater is well-known, but less is known about the bacterial community dynamics in the affected surface waters. Understanding the bacterial community characteristics -from the source of contamination, through the watershed to the DW production process-may help safeguard human health and the environment.
RESULTS: The spatial and seasonal dynamics of bacterial communities, their predicted functions, and potential health-related bacterial (PHRB) reads within the Kokemäenjoki River watershed in southwest Finland were analyzed with the 16S rRNA-gene amplicon sequencing method. Water samples were collected from various sampling points of the watershed, from its major pollution sources (sewage influent and effluent, industrial effluent, mine runoff) and different stages of the DW treatment process (pre-treatment, groundwater observation well, DW production well) by using the river water as raw water with an artificial groundwater recharge (AGR). The beta-diversity analysis revealed that bacterial communities were highly varied among sample groups (R = 0.92, p <  0.001, ANOSIM). The species richness and evenness indices were highest in surface water (Chao1; 920 ± 10) among sample groups and gradually decreased during the DW treatment process (DW production well; Chao1: 320 ± 20). Although the phylum Proteobacteria was omnipresent, its relative abundance was higher in sewage and industrial effluents (66-80%) than in surface water (55%). Phyla Firmicutes and Fusobacteria were only detected in sewage samples. Actinobacteria was more abundant in the surface water (≥13%) than in other groups (≤3%). Acidobacteria was more abundant in the DW treatment process (≥13%) than in others (≤2%). In total, the share of PHRB reads was higher in sewage and surface water than in the DW treatment samples. The seasonal effect in bacterial communities was observed only on surface water samples, with the lowest diversity during summer.
CONCLUSIONS: The low bacterial diversity and absence of PHRB read in the DW samples indicate AGR can produce biologically stable and microbiologically safe drinking water. Furthermore, the significantly different bacterial communities at the pollution sources compared to surface water and DW samples highlight the importance of effective wastewater treatment for protecting the environment and human health.

Entities:  

Keywords:  16S rRNA amplicon sequencing; Bacterial communities; Predicted biological function; Seasonal effects; Sewage effluent; Surface water

Year:  2021        PMID: 34022963     DOI: 10.1186/s40793-021-00379-w

Source DB:  PubMed          Journal:  Environ Microbiome        ISSN: 2524-6372


  30 in total

1.  Search and clustering orders of magnitude faster than BLAST.

Authors:  Robert C Edgar
Journal:  Bioinformatics       Date:  2010-08-12       Impact factor: 6.937

2.  Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample.

Authors:  J Gregory Caporaso; Christian L Lauber; William A Walters; Donna Berg-Lyons; Catherine A Lozupone; Peter J Turnbaugh; Noah Fierer; Rob Knight
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-03       Impact factor: 11.205

3.  Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.

Authors:  T Z DeSantis; P Hugenholtz; N Larsen; M Rojas; E L Brodie; K Keller; T Huber; D Dalevi; P Hu; G L Andersen
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

4.  Quantifying the Relative Contributions of Environmental Sources to the Microbial Community in an Urban Stream under Dry and Wet Weather Conditions.

Authors:  Darshan Baral; Allison Speicher; Bruce Dvorak; David Admiraal; Xu Li
Journal:  Appl Environ Microbiol       Date:  2018-07-17       Impact factor: 4.792

5.  PyNAST: a flexible tool for aligning sequences to a template alignment.

Authors:  J Gregory Caporaso; Kyle Bittinger; Frederic D Bushman; Todd Z DeSantis; Gary L Andersen; Rob Knight
Journal:  Bioinformatics       Date:  2009-11-13       Impact factor: 6.937

6.  QIIME allows analysis of high-throughput community sequencing data.

Authors:  J Gregory Caporaso; Justin Kuczynski; Jesse Stombaugh; Kyle Bittinger; Frederic D Bushman; Elizabeth K Costello; Noah Fierer; Antonio Gonzalez Peña; Julia K Goodrich; Jeffrey I Gordon; Gavin A Huttley; Scott T Kelley; Dan Knights; Jeremy E Koenig; Ruth E Ley; Catherine A Lozupone; Daniel McDonald; Brian D Muegge; Meg Pirrung; Jens Reeder; Joel R Sevinsky; Peter J Turnbaugh; William A Walters; Jeremy Widmann; Tanya Yatsunenko; Jesse Zaneveld; Rob Knight
Journal:  Nat Methods       Date:  2010-04-11       Impact factor: 28.547

7.  UCHIME improves sensitivity and speed of chimera detection.

Authors:  Robert C Edgar; Brian J Haas; Jose C Clemente; Christopher Quince; Rob Knight
Journal:  Bioinformatics       Date:  2011-06-23       Impact factor: 6.937

8.  MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data.

Authors:  Achal Dhariwal; Jasmine Chong; Salam Habib; Irah L King; Luis B Agellon; Jianguo Xia
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

9.  Tuning up microbiome analysis to monitor WWTPs' biological reactors functioning.

Authors:  Miguel de Celis; Ignacio Belda; Rüdiger Ortiz-Álvarez; Lucía Arregui; Domingo Marquina; Susana Serrano; Antonio Santos
Journal:  Sci Rep       Date:  2020-03-05       Impact factor: 4.379

10.  Ecological patterns, diversity and core taxa of microbial communities in groundwater-fed rapid gravity filters.

Authors:  Arda Gülay; Sanin Musovic; Hans-Jørgen Albrechtsen; Waleed Abu Al-Soud; Søren J Sørensen; Barth F Smets
Journal:  ISME J       Date:  2016-03-08       Impact factor: 10.302

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  3 in total

1.  Metagenomic community composition and resistome analysis in a full-scale cold climate wastewater treatment plant.

Authors:  Paul Jankowski; Jaydon Gan; Tri Le; Michaela McKennitt; Audrey Garcia; Kadir Yanaç; Qiuyan Yuan; Miguel Uyaguari-Diaz
Journal:  Environ Microbiome       Date:  2022-01-15

2.  Bacterial Genes Encoding Resistance Against Antibiotics and Metals in Well-Maintained Drinking Water Distribution Systems in Finland.

Authors:  Ananda Tiwari; Vicente Gomez-Alvarez; Sallamaari Siponen; Anniina Sarekoski; Anna-Maria Hokajärvi; Ari Kauppinen; Eila Torvinen; Ilkka T Miettinen; Tarja Pitkänen
Journal:  Front Microbiol       Date:  2022-02-07       Impact factor: 5.640

Review 3.  Bathing Water Quality Monitoring Practices in Europe and the United States.

Authors:  Ananda Tiwari; David M Oliver; Aaron Bivins; Samendra P Sherchan; Tarja Pitkänen
Journal:  Int J Environ Res Public Health       Date:  2021-05-21       Impact factor: 3.390

  3 in total

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