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Literature DB >> 20383131

QIIME allows analysis of high-throughput community sequencing data.

J Gregory Caporaso, Justin Kuczynski, Jesse Stombaugh, Kyle Bittinger, Frederic D Bushman, Elizabeth K Costello, Noah Fierer, Antonio Gonzalez Peña, Julia K Goodrich, Jeffrey I Gordon, Gavin A Huttley, Scott T Kelley, Dan Knights, Jeremy E Koenig, Ruth E Ley, Catherine A Lozupone, Daniel McDonald, Brian D Muegge, Meg Pirrung, Jens Reeder, Joel R Sevinsky, Peter J Turnbaugh, William A Walters, Jeremy Widmann, Tanya Yatsunenko, Jesse Zaneveld, Rob Knight.

Abstract

Entities: Chemical

Mesh：

Substances：
RNA, Ribosomal, 16S

Year: 2010 PMID： 20383131 PMCID： PMC3156573 DOI： 10.1038/nmeth.f.303

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

× No keyword cloud information.

6 in total

1. Ecology: spying on nature.

Authors: Michael Hopkin
Journal: Nature Date: 2006-11-23 Impact factor: 49.962

2. Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex.

Authors: Micah Hamady; Jeffrey J Walker; J Kirk Harris; Nicholas J Gold; Rob Knight
Journal: Nat Methods Date: 2008-02-10 Impact factor: 28.547

3. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.

Authors: Patrick D Schloss; Sarah L Westcott; Thomas Ryabin; Justine R Hall; Martin Hartmann; Emily B Hollister; Ryan A Lesniewski; Brian B Oakley; Donovan H Parks; Courtney J Robinson; Jason W Sahl; Blaz Stres; Gerhard G Thallinger; David J Van Horn; Carolyn F Weber
Journal: Appl Environ Microbiol Date: 2009-10-02 Impact factor: 4.792

4. The NIH Human Microbiome Project.

Authors: Jane Peterson; Susan Garges; Maria Giovanni; Pamela McInnes; Lu Wang; Jeffery A Schloss; Vivien Bonazzi; Jean E McEwen; Kris A Wetterstrand; Carolyn Deal; Carl C Baker; Valentina Di Francesco; T Kevin Howcroft; Robert W Karp; R Dwayne Lunsford; Christopher R Wellington; Tsegahiwot Belachew; Michael Wright; Christina Giblin; Hagit David; Melody Mills; Rachelle Salomon; Christopher Mullins; Beena Akolkar; Lisa Begg; Cindy Davis; Lindsey Grandison; Michael Humble; Jag Khalsa; A Roger Little; Hannah Peavy; Carol Pontzer; Matthew Portnoy; Michael H Sayre; Pamela Starke-Reed; Samir Zakhari; Jennifer Read; Bracie Watson; Mark Guyer
Journal: Genome Res Date: 2009-10-09 Impact factor: 9.043

5. The Ribosomal Database Project: improved alignments and new tools for rRNA analysis.

Authors: J R Cole; Q Wang; E Cardenas; J Fish; B Chai; R J Farris; A S Kulam-Syed-Mohideen; D M McGarrell; T Marsh; G M Garrity; J M Tiedje
Journal: Nucleic Acids Res Date: 2008-11-12 Impact factor: 16.971

6. PyCogent: a toolkit for making sense from sequence.

Authors: Rob Knight; Peter Maxwell; Amanda Birmingham; Jason Carnes; J Gregory Caporaso; Brett C Easton; Michael Eaton; Micah Hamady; Helen Lindsay; Zongzhi Liu; Catherine Lozupone; Daniel McDonald; Michael Robeson; Raymond Sammut; Sandra Smit; Matthew J Wakefield; Jeremy Widmann; Shandy Wikman; Stephanie Wilson; Hua Ying; Gavin A Huttley
Journal: Genome Biol Date: 2007 Impact factor: 13.583

6 in total

2000 in total

1. Estrogen protection against EAE modulates the microbiota and mucosal-associated regulatory cells.

Authors: Gil Benedek; Jun Zhang; Ha Nguyen; Gail Kent; Hilary A Seifert; Sean Davin; Patrick Stauffer; Arthur A Vandenbark; Lisa Karstens; Mark Asquith; Halina Offner
Journal: J Neuroimmunol Date: 2017-06-21 Impact factor: 3.478

2. Actinobacterial nitrate reducers and proteobacterial denitrifiers are abundant in N2O-metabolizing palsa peat.

Authors: Katharina Palmer; Marcus A Horn
Journal: Appl Environ Microbiol Date: 2012-06-01 Impact factor: 4.792

3. Lactobacillus reuteri induces gut intraepithelial CD4⁺CD8αα⁺ T cells.

Authors: Luisa Cervantes-Barragan; Jiani N Chai; Ma Diarey Tianero; Blanda Di Luccia; Philip P Ahern; Joseph Merriman; Victor S Cortez; Michael G Caparon; Mohamed S Donia; Susan Gilfillan; Marina Cella; Jeffrey I Gordon; Chyi-Song Hsieh; Marco Colonna
Journal: Science Date: 2017-08-03 Impact factor: 47.728

4. iNOS- and NOX1-dependent ROS production maintains bacterial homeostasis in the ileum of mice.

Authors: C Matziouridou; S D C Rocha; O A Haabeth; K Rudi; H Carlsen; A Kielland
Journal: Mucosal Immunol Date: 2017-12-06 Impact factor: 7.313

5. Hierarchical social networks shape gut microbial composition in wild Verreaux's sifaka.

Authors: Amanda C Perofsky; Rebecca J Lewis; Laura A Abondano; Anthony Di Fiore; Lauren Ancel Meyers
Journal: Proc Biol Sci Date: 2017-12-06 Impact factor: 5.349

Review 6. Potential for Monitoring Gut Microbiota for Diagnosing Infections and Graft-versus-Host Disease in Cancer and Stem Cell Transplant Patients.

Authors: Andrew Y Koh
Journal: Clin Chem Date: 2017-07-18 Impact factor: 8.327

7. High-protein diet improves sensitivity to cholecystokinin and shifts the cecal microbiome without altering brain inflammation in diet-induced obesity in rats.

Authors: Lixin Wang; Jonathan P Jacobs; Venu Lagishetty; Pu-Qing Yuan; Shuping V Wu; Mulugeta Million; Joseph R Reeve; Joseph R Pisegna; Yvette Taché
Journal: Am J Physiol Regul Integr Comp Physiol Date: 2017-07-19 Impact factor: 3.619

8. The nasopharyngeal microbiota in patients with viral respiratory tract infections is enriched in bacterial pathogens.

Authors: Sophie Edouard; Matthieu Million; Dipankar Bachar; Grégory Dubourg; Caroline Michelle; Laetitia Ninove; Rémi Charrel; Didier Raoult
Journal: Eur J Clin Microbiol Infect Dis Date: 2018-07-22 Impact factor: 3.267

9. Location, Root Proximity, and Glyphosate-Use History Modulate the Effects of Glyphosate on Fungal Community Networks of Wheat.

Authors: Daniel C Schlatter; Chuntao Yin; Ian Burke; Scot Hulbert; Timothy Paulitz
Journal: Microb Ecol Date: 2017-12-07 Impact factor: 4.552

10. Mapping the Bacterial Community in Digboi Oil Refinery, India by High-Throughput Sequencing Approach.

Authors: Abhisek Dasgupta; Ratul Saikia; Pratap J Handique
Journal: Curr Microbiol Date: 2018-07-20 Impact factor: 2.188