Literature DB >> 33977579

Spectral fitting strategy to overcome the overlap between 2-hydroxyglutarate and lipid resonances at 2.25 ppm.

Pegah Askari1,2, Ivan E Dimitrov1,3, Sandeep K Ganji4,5, Vivek Tiwari1, Michael Levy6, Toral R Patel6,7,8, Edward Pan7,9, Bruce E Mickey6,9,10, Craig R Malloy1,5,11, Elizabeth A Maher7,9,10,12, Changho Choi1,5,9.   

Abstract

PURPOSE: 1 H MRS provides a noninvasive tool for identifying mutations in isocitrate dehydrogenase (IDH). Quantification of the prominent 2-hydroxyglutarate (2HG) resonance at 2.25 ppm is often confounded by the lipid resonance at the same frequency in tumors with elevated lipids. We propose a new spectral fitting approach to separate these overlapped signals, therefore, improving 2HG evaluation.
METHODS: TE 97 ms PRESS was acquired at 3T from 42 glioma patients. New lipid basis sets were created, in which the small lipid 2.25-ppm signal strength was preset with reference to the lipid signal at 0.9 ppm, incorporating published fat relaxation data. LCModel fitting using the new lipid bases (Fitting method 2) was conducted along with fitting using the LCModel built-in lipid basis set (Fitting method 1), in which the lipid 2.25-ppm signal is assessed with reference to the lipid 1.3-ppm signal. In-house basis spectra of low-molecular-weight metabolites were used in both fitting methods.
RESULTS: Fitting method 2 showed marked improvement in identifying IDH mutational status compared with Fitting method 1. 2HG estimates from Fitting method 2 were overall smaller than those from Fitting method 1, which was because of differential assignment of the signal at 2.25 ppm to lipids. In receiver operating characteristic analysis, Fitting method 2 provided a complete distinction between IDH mutation and wild-type whereas Fitting method 1 did not.
CONCLUSION: The data suggest that 1 H MR spectral fitting using the new lipid basis set provides a robust fitting strategy that improves 2HG evaluation in brain tumors with elevated lipids.
© 2021 International Society for Magnetic Resonance in Medicine.

Entities:  

Keywords:  1H MRS; 2-Hydroxyglutarate; 2HG; 3T; IDH mutation; Lip; TE 97 ms PRESS; lipids

Mesh:

Substances:

Year:  2021        PMID: 33977579      PMCID: PMC8295210          DOI: 10.1002/mrm.28829

Source DB:  PubMed          Journal:  Magn Reson Med        ISSN: 0740-3194            Impact factor:   3.737


  27 in total

1.  WET, a T1- and B1-insensitive water-suppression method for in vivo localized 1H NMR spectroscopy.

Authors:  R J Ogg; P B Kingsley; J S Taylor
Journal:  J Magn Reson B       Date:  1994-05

2.  In vivo determination of human breast fat composition by ¹H magnetic resonance spectroscopy at 7 T.

Authors:  Ivan E Dimitrov; Deborah Douglas; Jimin Ren; Nadine B Smith; Andrew G Webb; A Dean Sherry; Craig R Malloy
Journal:  Magn Reson Med       Date:  2011-06-07       Impact factor: 4.668

3.  Proton T2 measurement and quantification of lactate in brain tumors by MRS at 3 Tesla in vivo.

Authors:  Akshay Madan; Sandeep K Ganji; Zhongxu An; Kevin S Choe; Marco C Pinho; Robert M Bachoo; Elizabeth M Maher; Changho Choi
Journal:  Magn Reson Med       Date:  2014-07-07       Impact factor: 4.668

Review 4.  MR-visible lipids and the tumor microenvironment.

Authors:  E James Delikatny; Sanjeev Chawla; Daniel-Joseph Leung; Harish Poptani
Journal:  NMR Biomed       Date:  2011-04-27       Impact factor: 4.044

5.  Detection of 2-hydroxyglutarate in IDH-mutated glioma patients by in vivo spectral-editing and 2D correlation magnetic resonance spectroscopy.

Authors:  Ovidiu C Andronesi; Grace S Kim; Elizabeth Gerstner; Tracy Batchelor; Aria A Tzika; Valeria R Fantin; Matthew G Vander Heiden; A Gregory Sorensen
Journal:  Sci Transl Med       Date:  2012-01-11       Impact factor: 17.956

6.  Ex-vivo HRMAS of adult brain tumours: metabolite quantification and assignment of tumour biomarkers.

Authors:  Alan J Wright; Greg A Fellows; John R Griffiths; M Wilson; B Anthony Bell; Franklyn A Howe
Journal:  Mol Cancer       Date:  2010-03-23       Impact factor: 27.401

7.  Analysis of macromolecule resonances in 1H NMR spectra of human brain.

Authors:  K L Behar; D L Rothman; D D Spencer; O A Petroff
Journal:  Magn Reson Med       Date:  1994-09       Impact factor: 4.668

8.  An integrated genomic analysis of human glioblastoma multiforme.

Authors:  D Williams Parsons; Siân Jones; Xiaosong Zhang; Jimmy Cheng-Ho Lin; Rebecca J Leary; Philipp Angenendt; Parminder Mankoo; Hannah Carter; I-Mei Siu; Gary L Gallia; Alessandro Olivi; Roger McLendon; B Ahmed Rasheed; Stephen Keir; Tatiana Nikolskaya; Yuri Nikolsky; Dana A Busam; Hanna Tekleab; Luis A Diaz; James Hartigan; Doug R Smith; Robert L Strausberg; Suely Kazue Nagahashi Marie; Sueli Mieko Oba Shinjo; Hai Yan; Gregory J Riggins; Darell D Bigner; Rachel Karchin; Nick Papadopoulos; Giovanni Parmigiani; Bert Vogelstein; Victor E Velculescu; Kenneth W Kinzler
Journal:  Science       Date:  2008-09-04       Impact factor: 47.728

9.  Estimation of metabolite concentrations from localized in vivo proton NMR spectra.

Authors:  S W Provencher
Journal:  Magn Reson Med       Date:  1993-12       Impact factor: 4.668

10.  2-hydroxyglutarate detection by magnetic resonance spectroscopy in IDH-mutated patients with gliomas.

Authors:  Changho Choi; Sandeep K Ganji; Ralph J DeBerardinis; Kimmo J Hatanpaa; Dinesh Rakheja; Zoltan Kovacs; Xiao-Li Yang; Tomoyuki Mashimo; Jack M Raisanen; Isaac Marin-Valencia; Juan M Pascual; Christopher J Madden; Bruce E Mickey; Craig R Malloy; Robert M Bachoo; Elizabeth A Maher
Journal:  Nat Med       Date:  2012-01-26       Impact factor: 53.440

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  3 in total

1.  Optimization of spectrally selective 180° radiofrequency pulse timings in J-difference editing (MEGA) of lactate.

Authors:  Sandeep K Ganji; Zhongxu An; Vivek Tiwari; Yongmin Chang; Toral R Patel; Elizabeth A Maher; Changho Choi
Journal:  Magn Reson Med       Date:  2021-10-17       Impact factor: 4.668

2.  Validation Study for Non-Invasive Prediction of IDH Mutation Status in Patients with Glioma Using In Vivo 1H-Magnetic Resonance Spectroscopy and Machine Learning.

Authors:  Elisabeth Bumes; Claudia Fellner; Franz A Fellner; Karin Fleischanderl; Martina Häckl; Stefan Lenz; Ralf Linker; Tim Mirus; Peter J Oefner; Christian Paar; Martin Andreas Proescholdt; Markus J Riemenschneider; Katharina Rosengarth; Serge Weis; Christina Wendl; Sibylle Wimmer; Peter Hau; Wolfram Gronwald; Markus Hutterer
Journal:  Cancers (Basel)       Date:  2022-06-02       Impact factor: 6.575

Review 3.  Emerging MR Imaging and Spectroscopic Methods to Study Brain Tumor Metabolism.

Authors:  Manoj Kumar; Ravi Prakash Reddy Nanga; Gaurav Verma; Neil Wilson; Jean Christophe Brisset; Kavindra Nath; Sanjeev Chawla
Journal:  Front Neurol       Date:  2022-03-16       Impact factor: 4.003

  3 in total

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