Literature DB >> 33966626

COVID-19 one year into the pandemic: from genetics and genomics to therapy, vaccination, and policy.

Giuseppe Novelli1,2,3, Michela Biancolella4, Ruty Mehrian-Shai5, Vito Luigi Colona6, Anderson F Brito7, Nathan D Grubaugh7, Vasilis Vasiliou8, Lucio Luzzatto9, Juergen K V Reichardt10.   

Abstract

COVID-19 has engulfed the world and it will accompany us all for some time to come. Here, we review the current state at the milestone of 1 year into the pandemic, as declared by the WHO (World Health Organization). We review several aspects of the on-going pandemic, focusing first on two major topics: viral variants and the human genetic susceptibility to disease severity. We then consider recent and exciting new developments in therapeutics, such as monoclonal antibodies, and in prevention strategies, such as vaccines. We also briefly discuss how advances in basic science and in biotechnology, under the threat of a worldwide emergency, have accelerated to an unprecedented degree of the transition from the laboratory to clinical applications. While every day we acquire more and more tools to deal with the on-going pandemic, we are aware that the path will be arduous and it will require all of us being community-minded. In this respect, we lament past delays in timely full investigations, and we call for bypassing local politics in the interest of humankind on all continents.

Entities:  

Keywords:  COVID-19; Coronavirus; Monoclonal antibodies; Pandemic; Politics; SARS-CoV-2; Vaccines; Variants

Year:  2021        PMID: 33966626     DOI: 10.1186/s40246-021-00326-3

Source DB:  PubMed          Journal:  Hum Genomics        ISSN: 1473-9542            Impact factor:   4.639


  60 in total

Review 1.  Rates of evolutionary change in viruses: patterns and determinants.

Authors:  Siobain Duffy; Laura A Shackelton; Edward C Holmes
Journal:  Nat Rev Genet       Date:  2008-03-04       Impact factor: 53.242

Review 2.  Rules of engagement: molecular insights from host-virus arms races.

Authors:  Matthew D Daugherty; Harmit S Malik
Journal:  Annu Rev Genet       Date:  2012       Impact factor: 16.830

3.  Costs and benefits of mutational robustness in RNA viruses.

Authors:  Adi Stern; Simone Bianco; Ming Te Yeh; Caroline Wright; Kristin Butcher; Chao Tang; Rasmus Nielsen; Raul Andino
Journal:  Cell Rep       Date:  2014-08-07       Impact factor: 9.423

4.  Did the hesitancy in declaring COVID-19 a pandemic reflect a need to redefine the term?

Authors:  Manfred S Green
Journal:  Lancet       Date:  2020-03-13       Impact factor: 79.321

5.  Nextstrain: real-time tracking of pathogen evolution.

Authors:  James Hadfield; Colin Megill; Sidney M Bell; John Huddleston; Barney Potter; Charlton Callender; Pavel Sagulenko; Trevor Bedford; Richard A Neher
Journal:  Bioinformatics       Date:  2018-12-01       Impact factor: 6.931

6.  Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China.

Authors:  Chaolin Huang; Yeming Wang; Xingwang Li; Lili Ren; Jianping Zhao; Yi Hu; Li Zhang; Guohui Fan; Jiuyang Xu; Xiaoying Gu; Zhenshun Cheng; Ting Yu; Jiaan Xia; Yuan Wei; Wenjuan Wu; Xuelei Xie; Wen Yin; Hui Li; Min Liu; Yan Xiao; Hong Gao; Li Guo; Jungang Xie; Guangfa Wang; Rongmeng Jiang; Zhancheng Gao; Qi Jin; Jianwei Wang; Bin Cao
Journal:  Lancet       Date:  2020-01-24       Impact factor: 79.321

7.  Assessing the age specificity of infection fatality rates for COVID-19: systematic review, meta-analysis, and public policy implications.

Authors:  Andrew T Levin; William P Hanage; Nana Owusu-Boaitey; Kensington B Cochran; Seamus P Walsh; Gideon Meyerowitz-Katz
Journal:  Eur J Epidemiol       Date:  2020-12-08       Impact factor: 8.082

8.  HLA allele frequencies and susceptibility to COVID-19 in a group of 99 Italian patients.

Authors:  Antonio Novelli; Marco Andreani; Michela Biancolella; Laura Liberatoscioli; Chiara Passarelli; Vito Luigi Colona; Paola Rogliani; Francesca Leonardis; Andrea Campana; Rita Carsetti; Massimo Andreoni; Sergio Bernardini; Giuseppe Novelli; Franco Locatelli
Journal:  HLA       Date:  2020-09-03       Impact factor: 8.762

Review 9.  Coronavirus RNA Proofreading: Molecular Basis and Therapeutic Targeting.

Authors:  Fran Robson; Khadija Shahed Khan; Thi Khanh Le; Clément Paris; Sinem Demirbag; Peter Barfuss; Palma Rocchi; Wai-Lung Ng
Journal:  Mol Cell       Date:  2020-08-04       Impact factor: 17.970

Review 10.  Genetic variants of the human host influencing the coronavirus-associated phenotypes (SARS, MERS and COVID-19): rapid systematic review and field synopsis.

Authors:  Emilio Di Maria; Andrea Latini; Paola Borgiani; Giuseppe Novelli
Journal:  Hum Genomics       Date:  2020-09-11       Impact factor: 4.639

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  18 in total

1.  Will GWAS eventually allow the identification of genomic biomarkers for COVID-19 severity and mortality?

Authors:  Vito Luigi Colona; Michela Biancolella; Antonio Novelli; Giuseppe Novelli
Journal:  J Clin Invest       Date:  2021-12-01       Impact factor: 14.808

2.  Age-dependent impact of the major common genetic risk factor for COVID-19 on severity and mortality.

Authors:  Tomoko Nakanishi; Sara Pigazzini; Frauke Degenhardt; Mattia Cordioli; Guillaume Butler-Laporte; Douglas Maya-Miles; Luis Bujanda; Youssef Bouysran; Mari Ek Niemi; Adriana Palom; David Ellinghaus; Atlas Khan; Manuel Martínez-Bueno; Selina Rolker; Sara Amitrano; Luisa Roade Tato; Francesca Fava; Christoph D Spinner; Daniele Prati; David Bernardo; Federico Garcia; Gilles Darcis; Israel Fernández-Cadenas; Jan Cato Holter; Jesus M Banales; Robert Frithiof; Krzysztof Kiryluk; Stefano Duga; Rosanna Asselta; Alexandre C Pereira; Manuel Romero-Gómez; Beatriz Nafría-Jiménez; Johannes R Hov; Isabelle Migeotte; Alessandra Renieri; Anna M Planas; Kerstin U Ludwig; Maria Buti; Souad Rahmouni; Marta E Alarcón-Riquelme; Eva C Schulte; Andre Franke; Tom H Karlsen; Luca Valenti; Hugo Zeberg; J Brent Richards; Andrea Ganna
Journal:  J Clin Invest       Date:  2021-12-01       Impact factor: 14.808

3.  Autoantibodies neutralizing type I IFNs are present in ~4% of uninfected individuals over 70 years old and account for ~20% of COVID-19 deaths.

Authors:  Adrian Gervais; Tom Le Voyer; Jérémie Rosain; Quentin Philippot; Jérémy Manry; Eleftherios Michailidis; Hans-Heinrich Hoffmann; Shohei Eto; Marina Garcia-Prat; Lucy Bizien; Alba Parra-Martínez; Rui Yang; Liis Haljasmägi; Mélanie Migaud; Karita Särekannu; Julia Maslovskaja; Evangelos Vandreakos; Olivier Hermine; Aurora Pujol; Pärt Peterson; Trine H Mogensen; Lee Rowen; James Mond; Xavier de Lamballerie; Xavier Duval; France Mentré; Marie Zins; Pere Soler-Palacin; Roger Colobran; Guy Gorochov; Xavier Solanich; Sophie Susen; Javier Martinez-Picado; Didier Raoult; Marc Vasse; Peter K Gregersen; Lorenzo Piemonti; Carlos Rodríguez-Gallego; Luigi D Notarangelo; Helen C Su; Kai Kisand; Satoshi Okada; Anne Puel; Emmanuelle Jouanguy; Charles M Rice; Pierre Tiberghien; Qian Zhang; Aurélie Cobat; Laurent Abel; Jean-Laurent Casanova; Paul Bastard; Nicolas de Prost; Yacine Tandjaoui-Lambiotte; Charles-Edouard Luyt; Blanca Amador-Borrero; Alexandre Gaudet; Julien Poissy; Pascal Morel; Pascale Richard; Fabrice Cognasse; Jesus Troya; Sophie Trouillet-Assant; Alexandre Belot; Kahina Saker; Pierre Garçon; Jacques G Rivière; Jean-Christophe Lagier; Stéphanie Gentile; Lindsey B Rosen; Elana Shaw; Tomohiro Morio; Junko Tanaka; David Dalmau; Pierre-Louis Tharaux; Damien Sene; Alain Stepanian; Bruno Megarbane; Vasiliki Triantafyllia; Arnaud Fekkar; James R Heath; José Luis Franco; Juan-Manuel Anaya; Jordi Solé-Violán; Luisa Imberti; Andrea Biondi; Paolo Bonfanti; Riccardo Castagnoli; Ottavia M Delmonte; Yu Zhang; Andrew L Snow; Steven M Holland; Catherine Biggs; Marcela Moncada-Vélez; Andrés Augusto Arias; Lazaro Lorenzo; Soraya Boucherit; Boubacar Coulibaly; Dany Anglicheau; Anna M Planas; Filomeen Haerynck; Sotirija Duvlis; Robert L Nussbaum; Tayfun Ozcelik; Sevgi Keles; Ahmed A Bousfiha; Jalila El Bakkouri; Carolina Ramirez-Santana; Stéphane Paul; Qiang Pan-Hammarström; Lennart Hammarström; Annabelle Dupont; Alina Kurolap; Christine N Metz; Alessandro Aiuti; Giorgio Casari; Vito Lampasona; Fabio Ciceri; Lucila A Barreiros; Elena Dominguez-Garrido; Mateus Vidigal; Mayana Zatz; Diederik van de Beek; Sabina Sahanic; Ivan Tancevski; Yurii Stepanovskyy; Oksana Boyarchuk; Yoko Nukui; Miyuki Tsumura; Loreto Vidaur; Stuart G Tangye; Sonia Burrel; Darragh Duffy; Lluis Quintana-Murci; Adam Klocperk; Nelli Y Kann; Anna Shcherbina; Yu-Lung Lau; Daniel Leung; Matthieu Coulongeat; Julien Marlet; Rutger Koning; Luis Felipe Reyes; Angélique Chauvineau-Grenier; Fabienne Venet; Guillaume Monneret; Michel C Nussenzweig; Romain Arrestier; Idris Boudhabhay; Hagit Baris-Feldman; David Hagin; Joost Wauters; Isabelle Meyts; Adam H Dyer; Sean P Kennelly; Nollaig M Bourke; Rabih Halwani; Narjes Saheb Sharif-Askari; Karim Dorgham; Jérome Sallette; Souad Mehlal Sedkaoui; Suzan AlKhater; Raúl Rigo-Bonnin; Francisco Morandeira; Lucie Roussel; Donald C Vinh; Sisse Rye Ostrowski; Antonio Condino-Neto; Carolina Prando; Anastasiia Bonradenko; András N Spaan; Laurent Gilardin; Jacques Fellay; Stanislas Lyonnet; Kaya Bilguvar; Richard P Lifton; Shrikant Mane; Mark S Anderson; Bertrand Boisson; Vivien Béziat; Shen-Ying Zhang; Stéphanie Debette
Journal:  Sci Immunol       Date:  2021-08-19

4.  COVID-19 and Molecular Genetics.

Authors:  Giuseppe Novelli; Michela Biancolella
Journal:  Genes (Basel)       Date:  2022-04-12       Impact factor: 4.096

5.  A systematic review of Vaccine Breakthrough Infections by SARS-CoV-2 Delta Variant.

Authors:  Mengxin Zhang; Ying Liang; Dongsheng Yu; Bang Du; Weyland Cheng; Lifeng Li; Zhidan Yu; Shuying Luo; Yaodong Zhang; Huanmin Wang; Xianwei Zhang; Wancun Zhang
Journal:  Int J Biol Sci       Date:  2022-01-01       Impact factor: 6.580

6.  Interrogating COVID-19 vaccine intent in the Philippines with a nationwide open-access online survey.

Authors:  Alexandria Caple; Arnie Dimaano; Marc Martin Sagolili; April Anne Uy; Panjee Mariel Aguirre; Dean Lotus Alano; Giselle Sophia Camaya; Brent John Ciriaco; Princess Jerah Mae Clavo; Dominic Cuyugan; Cleinne Florence Geeseler Fermo; Paul Jeremy Lanete; Ardwayne Jurel La Torre; Thomas Loteyro; Raisa Mikaela Lua; Nicole Gayle Manansala; Raphael Willard Mosquito; Alexa Octaviano; Alexandra Erika Orfanel; Gheyanna Merly Pascual; Aubrey Joy Sale; Sophia Lorraine Tendenilla; Maria Sofia Lauren Trinidad; Nicole Jan Trinidad; Daphne Louise Verano; Nicanor Austriaco
Journal:  PeerJ       Date:  2022-02-16       Impact factor: 2.984

7.  Safety of COVID-19 Vaccination in Immune-Deficient Patients Receiving Supplemental Immunoglobulin Therapies.

Authors:  Jacqueline D Squire; Avni Y Joshi
Journal:  J Clin Immunol       Date:  2021-07-22       Impact factor: 8.317

Review 8.  Teicoplanin-A New Use for an Old Drug in the COVID-19 Era?

Authors:  Vladimir Vimberg
Journal:  Pharmaceuticals (Basel)       Date:  2021-11-26

9.  Pre-existing Autoantibodies Neutralizing High Concentrations of Type I Interferons in Almost 10% of COVID-19 Patients Admitted to Intensive Care in Barcelona.

Authors:  Xavier Solanich; Raúl Rigo-Bonnin; Victor-David Gumucio; Paul Bastard; Jérémie Rosain; Quentin Philippot; Xosé-Luis Perez-Fernandez; Maria-Paz Fuset-Cabanes; Miguel-Ángel Gordillo-Benitez; Guillermo Suarez-Cuartin; Enric Boza-Hernandez; Antoni Riera-Mestre; Alba Parra-Martínez; Roger Colobran; Arnau Antolí; Sergio Navarro; Gemma Rocamora-Blanch; Mario Framil; Laura Calatayud; Xavier Corbella; Jean-Laurent Casanova; Francisco Morandeira; Joan Sabater-Riera
Journal:  J Clin Immunol       Date:  2021-09-27       Impact factor: 8.317

10.  sRAGE alleviates SARS-CoV-2-induced pneumonia in hamster.

Authors:  Xiuqin Zhang; Dan Li; Rui Sun; Xinli Hu; Zhiqi Song; Xiaotian Ni; Hua Zhu; Tiannan Guo; Chuan Qin; Rui-Ping Xiao
Journal:  Signal Transduct Target Ther       Date:  2022-02-02
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