Literature DB >> 25127138

Costs and benefits of mutational robustness in RNA viruses.

Adi Stern1, Simone Bianco2, Ming Te Yeh3, Caroline Wright3, Kristin Butcher3, Chao Tang4, Rasmus Nielsen5, Raul Andino6.   

Abstract

The accumulation of mutations in RNA viruses is thought to facilitate rapid adaptation to changes in the environment. However, most mutations have deleterious effects on fitness, especially for viruses. Thus, tolerance to mutations should determine the nature and extent of genetic diversity that can be maintained in the population. Here, we combine population genetics theory, computer simulation, and experimental evolution to examine the advantages and disadvantages of tolerance to mutations, also known as mutational robustness. We find that mutational robustness increases neutral diversity and, as expected, can facilitate adaptation to a new environment. Surprisingly, under certain conditions, robustness may also be an impediment for viral adaptation, if a highly diverse population contains a large proportion of previously neutral mutations that are deleterious in the new environment. These findings may inform therapeutic strategies that cause extinction of otherwise robust viral populations.
Copyright © 2014 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 25127138      PMCID: PMC4142091          DOI: 10.1016/j.celrep.2014.07.011

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  60 in total

Review 1.  RNA virus genetic robustness: possible causes and some consequences.

Authors:  Santiago F Elena
Journal:  Curr Opin Virol       Date:  2012-07-19       Impact factor: 7.090

2.  Evolutionary rescue from extinction is contingent on a lower rate of environmental change.

Authors:  Haley A Lindsey; Jenna Gallie; Susan Taylor; Benjamin Kerr
Journal:  Nature       Date:  2013-02-10       Impact factor: 49.962

3.  High-resolution analysis of intrahost genetic diversity in dengue virus serotype 1 infection identifies mixed infections.

Authors:  Khoa T D Thai; Matthew R Henn; Michael C Zody; Vianney Tricou; Nguyen Minh Nguyet; Patrick Charlebois; Niall J Lennon; Lisa Green; Peter J de Vries; Tran Tinh Hien; Jeremy Farrar; H Rogier van Doorn; Menno D de Jong; Bruce W Birren; Edward C Holmes; Cameron P Simmons
Journal:  J Virol       Date:  2011-11-16       Impact factor: 5.103

Review 4.  The role of mutational robustness in RNA virus evolution.

Authors:  Adam S Lauring; Judith Frydman; Raul Andino
Journal:  Nat Rev Microbiol       Date:  2013-03-25       Impact factor: 60.633

5.  Evidence of Muller's ratchet in herpes simplex virus type 1.

Authors:  Nacarí Jaramillo; Esteban Domingo; María Carmen Muñoz-Egea; Enrique Tabarés; Ignacio Gadea
Journal:  J Gen Virol       Date:  2012-10-24       Impact factor: 3.891

6.  The distribution of mutational fitness effects of phage φX174 on different hosts.

Authors:  Pedro F Vale; Marc Choisy; Rémy Froissart; Rafael Sanjuán; Sylvain Gandon
Journal:  Evolution       Date:  2012-05-31       Impact factor: 3.694

7.  Effect of host species on the distribution of mutational fitness effects for an RNA virus.

Authors:  Jasna Lalić; José M Cuevas; Santiago F Elena
Journal:  PLoS Genet       Date:  2011-11-17       Impact factor: 5.917

8.  Identification and manipulation of the molecular determinants influencing poliovirus recombination.

Authors:  Charles Runckel; Oscar Westesson; Raul Andino; Joseph L DeRisi
Journal:  PLoS Pathog       Date:  2013-02-07       Impact factor: 6.823

9.  Estimating selection coefficients in spatially structured populations from time series data of allele frequencies.

Authors:  Iain Mathieson; Gil McVean
Journal:  Genetics       Date:  2013-01-10       Impact factor: 4.562

10.  From molecular genetics to phylodynamics: evolutionary relevance of mutation rates across viruses.

Authors:  Rafael Sanjuán
Journal:  PLoS Pathog       Date:  2012-05-03       Impact factor: 6.823

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  22 in total

1.  The Evolutionary Pathway to Virulence of an RNA Virus.

Authors:  Adi Stern; Ming Te Yeh; Tal Zinger; Matt Smith; Caroline Wright; Guy Ling; Rasmus Nielsen; Andrew Macadam; Raul Andino
Journal:  Cell       Date:  2017-03-23       Impact factor: 41.582

Review 2.  Emergency Services of Viral RNAs: Repair and Remodeling.

Authors:  Vadim I Agol; Anatoly P Gmyl
Journal:  Microbiol Mol Biol Rev       Date:  2018-03-14       Impact factor: 11.056

3.  A systematic survey of an intragenic epistatic landscape.

Authors:  Claudia Bank; Ryan T Hietpas; Jeffrey D Jensen; Daniel N A Bolon
Journal:  Mol Biol Evol       Date:  2014-11-03       Impact factor: 16.240

Review 4.  Dynamics of West Nile virus evolution in mosquito vectors.

Authors:  Nathan D Grubaugh; Gregory D Ebel
Journal:  Curr Opin Virol       Date:  2016-10-24       Impact factor: 7.090

5.  Ribozyme Mutagenic Evolution: Mechanisms of Survival.

Authors:  Carolina Diaz Arenas; Aleksandra Ardaševa; Jonathan Miller; Alexander S Mikheyev; Yohei Yokobayashi
Journal:  Orig Life Evol Biosph       Date:  2022-01-07       Impact factor: 1.950

Review 6.  Mapping the Evolutionary Potential of RNA Viruses.

Authors:  Patrick T Dolan; Zachary J Whitfield; Raul Andino
Journal:  Cell Host Microbe       Date:  2018-04-11       Impact factor: 21.023

7.  Genetic Drift during Systemic Arbovirus Infection of Mosquito Vectors Leads to Decreased Relative Fitness during Host Switching.

Authors:  Nathan D Grubaugh; James Weger-Lucarelli; Reyes A Murrieta; Joseph R Fauver; Selene M Garcia-Luna; Abhishek N Prasad; William C Black; Gregory D Ebel
Journal:  Cell Host Microbe       Date:  2016-03-31       Impact factor: 21.023

8.  RNA Recombination Enhances Adaptability and Is Required for Virus Spread and Virulence.

Authors:  Yinghong Xiao; Igor M Rouzine; Simone Bianco; Ashley Acevedo; Elizabeth Faul Goldstein; Mikhail Farkov; Leonid Brodsky; Raul Andino
Journal:  Cell Host Microbe       Date:  2016-04-13       Impact factor: 21.023

Review 9.  COVID-19 one year into the pandemic: from genetics and genomics to therapy, vaccination, and policy.

Authors:  Giuseppe Novelli; Michela Biancolella; Ruty Mehrian-Shai; Vito Luigi Colona; Anderson F Brito; Nathan D Grubaugh; Vasilis Vasiliou; Lucio Luzzatto; Juergen K V Reichardt
Journal:  Hum Genomics       Date:  2021-05-10       Impact factor: 4.639

10.  Intra-host evolutionary dynamics of the hepatitis C virus among people who inject drugs.

Authors:  Vincent Montoya; Anita Y M Howe; Weiyan Y Dong; Winnie Dong; Chanson J Brumme; Andrea D Olmstead; Kanna Hayashi; P Richard Harrigan; Jeffrey B Joy
Journal:  Sci Rep       Date:  2021-05-11       Impact factor: 4.379

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