Literature DB >> 34673571

Will GWAS eventually allow the identification of genomic biomarkers for COVID-19 severity and mortality?

Vito Luigi Colona1, Michela Biancolella2, Antonio Novelli3, Giuseppe Novelli1,4,5.   

Abstract

GWAS involve testing genetic variants across the genomes of many individuals to identify genotype-phenotype associations. GWAS have enabled the identification of numerous genomic biomarkers in various complex human diseases, including infectious ones. However, few of these studies are relevant for clinical practice or at the bedside. In this issue of the JCI, Nakanishi et al. characterized the clinical implications of a major genetic risk factor for COVID-19 severity and its age-dependent effect, using individual-level data in a large international multicenter consortium. This study indicates that a common COVID-19 genetic risk factor (rs10490770) associates with increased risks of morbidity and mortality, suggesting potential implications for future clinical risk management. How can the genomic biomarkers identified by GWAS be associated with the clinical outcomes of an infectious disease? In this Commentary, we evaluate the advantages and limitations of this approach.

Entities:  

Mesh:

Substances:

Year:  2021        PMID: 34673571      PMCID: PMC8631589          DOI: 10.1172/JCI155011

Source DB:  PubMed          Journal:  J Clin Invest        ISSN: 0021-9738            Impact factor:   14.808


  24 in total

1.  Age-dependent impact of the major common genetic risk factor for COVID-19 on severity and mortality.

Authors:  Tomoko Nakanishi; Sara Pigazzini; Frauke Degenhardt; Mattia Cordioli; Guillaume Butler-Laporte; Douglas Maya-Miles; Luis Bujanda; Youssef Bouysran; Mari Ek Niemi; Adriana Palom; David Ellinghaus; Atlas Khan; Manuel Martínez-Bueno; Selina Rolker; Sara Amitrano; Luisa Roade Tato; Francesca Fava; Christoph D Spinner; Daniele Prati; David Bernardo; Federico Garcia; Gilles Darcis; Israel Fernández-Cadenas; Jan Cato Holter; Jesus M Banales; Robert Frithiof; Krzysztof Kiryluk; Stefano Duga; Rosanna Asselta; Alexandre C Pereira; Manuel Romero-Gómez; Beatriz Nafría-Jiménez; Johannes R Hov; Isabelle Migeotte; Alessandra Renieri; Anna M Planas; Kerstin U Ludwig; Maria Buti; Souad Rahmouni; Marta E Alarcón-Riquelme; Eva C Schulte; Andre Franke; Tom H Karlsen; Luca Valenti; Hugo Zeberg; J Brent Richards; Andrea Ganna
Journal:  J Clin Invest       Date:  2021-12-01       Impact factor: 14.808

Review 2.  The ABO blood group system and Plasmodium falciparum malaria.

Authors:  Christine M Cserti; Walter H Dzik
Journal:  Blood       Date:  2007-05-14       Impact factor: 22.113

3.  Phenome-wide and expression quantitative trait locus associations of coronavirus disease 2019 genetic risk loci.

Authors:  Chang Yoon Moon; Brian M Schilder; Towfique Raj; Kuan-Lin Huang
Journal:  iScience       Date:  2021-05-18

Review 4.  COVID-19 one year into the pandemic: from genetics and genomics to therapy, vaccination, and policy.

Authors:  Giuseppe Novelli; Michela Biancolella; Ruty Mehrian-Shai; Vito Luigi Colona; Anderson F Brito; Nathan D Grubaugh; Vasilis Vasiliou; Lucio Luzzatto; Juergen K V Reichardt
Journal:  Hum Genomics       Date:  2021-05-10       Impact factor: 4.639

5.  Do monogenic inborn errors of immunity cause susceptibility to severe COVID-19?

Authors:  Chris Cotsapas; Janna Saarela; Jocelyn R Farmer; Vinod Scaria; Roshini S Abraham
Journal:  J Clin Invest       Date:  2021-07-15       Impact factor: 19.456

6.  Genetic mechanisms of critical illness in COVID-19.

Authors:  Erola Pairo-Castineira; Sara Clohisey; Lucija Klaric; Andrew D Bretherick; Konrad Rawlik; Dorota Pasko; Susan Walker; Nick Parkinson; Max Head Fourman; Clark D Russell; James Furniss; Anne Richmond; Elvina Gountouna; Nicola Wrobel; David Harrison; Bo Wang; Yang Wu; Alison Meynert; Fiona Griffiths; Wilna Oosthuyzen; Athanasios Kousathanas; Loukas Moutsianas; Zhijian Yang; Ranran Zhai; Chenqing Zheng; Graeme Grimes; Rupert Beale; Jonathan Millar; Barbara Shih; Sean Keating; Marie Zechner; Chris Haley; David J Porteous; Caroline Hayward; Jian Yang; Julian Knight; Charlotte Summers; Manu Shankar-Hari; Paul Klenerman; Lance Turtle; Antonia Ho; Shona C Moore; Charles Hinds; Peter Horby; Alistair Nichol; David Maslove; Lowell Ling; Danny McAuley; Hugh Montgomery; Timothy Walsh; Alexandre C Pereira; Alessandra Renieri; Xia Shen; Chris P Ponting; Angie Fawkes; Albert Tenesa; Mark Caulfield; Richard Scott; Kathy Rowan; Lee Murphy; Peter J M Openshaw; Malcolm G Semple; Andrew Law; Veronique Vitart; James F Wilson; J Kenneth Baillie
Journal:  Nature       Date:  2020-12-11       Impact factor: 69.504

7.  Scientists set out to connect the dots on long COVID.

Authors:  Vivien Marx
Journal:  Nat Methods       Date:  2021-05       Impact factor: 47.990

8.  A compendium of uniformly processed human gene expression and splicing quantitative trait loci.

Authors:  Nurlan Kerimov; James D Hayhurst; Kateryna Peikova; Jonathan R Manning; Peter Walter; Liis Kolberg; Marija Samoviča; Manoj Pandian Sakthivel; Ivan Kuzmin; Stephen J Trevanion; Tony Burdett; Simon Jupp; Helen Parkinson; Irene Papatheodorou; Andrew D Yates; Daniel R Zerbino; Kaur Alasoo
Journal:  Nat Genet       Date:  2021-09-06       Impact factor: 38.330

9.  Mapping the human genetic architecture of COVID-19.

Authors: 
Journal:  Nature       Date:  2021-07-08       Impact factor: 69.504

10.  Inborn errors of type I IFN immunity in patients with life-threatening COVID-19.

Authors:  Paul Bastard; Zhiyong Liu; Jérémie Le Pen; Marcela Moncada-Velez; Jie Chen; Masato Ogishi; Ira K D Sabli; Stephanie Hodeib; Cecilia Korol; Jérémie Rosain; Kaya Bilguvar; Junqiang Ye; Alexandre Bolze; Benedetta Bigio; Rui Yang; Andrés Augusto Arias; Qinhua Zhou; Yu Zhang; Richard P Lifton; Shen-Ying Zhang; Guy Gorochov; Vivien Béziat; Emmanuelle Jouanguy; Vanessa Sancho-Shimizu; Charles M Rice; Laurent Abel; Luigi D Notarangelo; Aurélie Cobat; Helen C Su; Jean-Laurent Casanova; Qian Zhang; Fanny Onodi; Sarantis Korniotis; Léa Karpf; Quentin Philippot; Marwa Chbihi; Lucie Bonnet-Madin; Karim Dorgham; Nikaïa Smith; William M Schneider; Brandon S Razooky; Hans-Heinrich Hoffmann; Eleftherios Michailidis; Leen Moens; Ji Eun Han; Lazaro Lorenzo; Lucy Bizien; Philip Meade; Anna-Lena Neehus; Aileen Camille Ugurbil; Aurélien Corneau; Gaspard Kerner; Peng Zhang; Franck Rapaport; Yoann Seeleuthner; Jeremy Manry; Cecile Masson; Yohann Schmitt; Agatha Schlüter; Tom Le Voyer; Taushif Khan; Juan Li; Jacques Fellay; Lucie Roussel; Mohammad Shahrooei; Mohammed F Alosaimi; Davood Mansouri; Haya Al-Saud; Fahd Al-Mulla; Feras Almourfi; Saleh Zaid Al-Muhsen; Fahad Alsohime; Saeed Al Turki; Rana Hasanato; Diederik van de Beek; Andrea Biondi; Laura Rachele Bettini; Mariella D'Angio'; Paolo Bonfanti; Luisa Imberti; Alessandra Sottini; Simone Paghera; Eugenia Quiros-Roldan; Camillo Rossi; Andrew J Oler; Miranda F Tompkins; Camille Alba; Isabelle Vandernoot; Jean-Christophe Goffard; Guillaume Smits; Isabelle Migeotte; Filomeen Haerynck; Pere Soler-Palacin; Andrea Martin-Nalda; Roger Colobran; Pierre-Emmanuel Morange; Sevgi Keles; Fatma Çölkesen; Tayfun Ozcelik; Kadriye Kart Yasar; Sevtap Senoglu; Şemsi Nur Karabela; Carlos Rodríguez-Gallego; Giuseppe Novelli; Sami Hraiech; Yacine Tandjaoui-Lambiotte; Xavier Duval; Cédric Laouénan; Andrew L Snow; Clifton L Dalgard; Joshua D Milner; Donald C Vinh; Trine H Mogensen; Nico Marr; András N Spaan; Bertrand Boisson; Stéphanie Boisson-Dupuis; Jacinta Bustamante; Anne Puel; Michael J Ciancanelli; Isabelle Meyts; Tom Maniatis; Vassili Soumelis; Ali Amara; Michel Nussenzweig; Adolfo García-Sastre; Florian Krammer; Aurora Pujol; Darragh Duffy
Journal:  Science       Date:  2020-09-24       Impact factor: 47.728

View more
  4 in total

Review 1.  Human genetic and immunological determinants of critical COVID-19 pneumonia.

Authors:  Qian Zhang; Paul Bastard; Aurélie Cobat; Jean-Laurent Casanova
Journal:  Nature       Date:  2022-01-28       Impact factor: 69.504

Review 2.  COVID-19 2022 update: transition of the pandemic to the endemic phase.

Authors:  Michela Biancolella; Vito Luigi Colona; Giuseppe Novelli; Juergen K V Reichardt; Ruty Mehrian-Shai; Jessica Lee Watt; Lucio Luzzatto
Journal:  Hum Genomics       Date:  2022-06-01       Impact factor: 6.481

3.  HLA-A∗03:01 is associated with increased risk of fever, chills, and stronger side effects from Pfizer-BioNTech COVID-19 vaccination.

Authors:  Alexandre Bolze; Iva Neveux; Kelly M Schiabor Barrett; Simon White; Magnus Isaksson; Shaun Dabe; William Lee; Joseph J Grzymski; Nicole L Washington; Elizabeth T Cirulli
Journal:  HGG Adv       Date:  2022-01-01

Review 4.  COVID-19: impact on Public Health and hypothesis-driven investigations on genetic susceptibility and severity.

Authors:  Susana David; Guillermo Dorado; Elsa L Duarte; Stephanie David-Bosne; João Trigueiro-Louro; Helena Rebelo-de-Andrade
Journal:  Immunogenetics       Date:  2022-03-29       Impact factor: 3.330

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.