Literature DB >> 30184304

Local and Global Dynamics in Intrinsically Disordered Synuclein.

Nasrollah Rezaei-Ghaleh1, Giacomo Parigi2, Andrea Soranno3,4, Andrea Holla4, Stefan Becker5, Benjamin Schuler4, Claudio Luchinat2, Markus Zweckstetter1.   

Abstract

Intrinsically disordered proteins (IDPs) experience a diverse spectrum of motions that are difficult to characterize with a single experimental technique. Herein we combine high- and low-field nuclear spin relaxation, nanosecond fluorescence correlation spectroscopy (nsFCS), and long molecular dynamics simulations of alpha-synuclein, an IDP involved in Parkinson disease, to obtain a comprehensive picture of its conformational dynamics. The combined analysis shows that fast motions below 2 ns caused by local dihedral angle fluctuations and conformational sampling within and between Ramachandran substates decorrelate most of the backbone N-H orientational memory. However, slow motions with correlation times of up to ca. 13 ns from segmental dynamics are present throughout the alpha-synuclein chain, in particular in its C-terminal domain, and global chain reconfiguration occurs on a timescale of ca. 60 ns. Our study demonstrates a powerful strategy to determine residue-specific protein dynamics in IDPs at different time and length scales.
© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  NMR spectroscopy; intrinsically disordered proteins; protein dynamics

Mesh:

Substances:

Year:  2018        PMID: 30184304     DOI: 10.1002/anie.201808172

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  18 in total

1.  Sequence-Dependent Backbone Dynamics of Intrinsically Disordered Proteins.

Authors:  Souvik Dey; Matthew MacAinsh; Huan-Xiang Zhou
Journal:  J Chem Theory Comput       Date:  2022-09-09       Impact factor: 6.578

Review 2.  Advances in studying protein disorder with solid-state NMR.

Authors:  Ansgar B Siemer
Journal:  Solid State Nucl Magn Reson       Date:  2020-01-12       Impact factor: 2.293

3.  Utilizing Time-Resolved Protein-Induced Fluorescence Enhancement to Identify Stable Local Conformations One α-Synuclein Monomer at a Time.

Authors:  Sofia Zaer; Eitan Lerner
Journal:  J Vis Exp       Date:  2021-05-30       Impact factor: 1.355

4.  Insights into the molecular mechanism of amyloid filament formation: Segmental folding of α-synuclein on lipid membranes.

Authors:  Leif Antonschmidt; Rıza Dervişoğlu; Vrinda Sant; Kumar Tekwani Movellan; Ingo Mey; Dietmar Riedel; Claudia Steinem; Stefan Becker; Loren B Andreas; Christian Griesinger
Journal:  Sci Adv       Date:  2021-05-14       Impact factor: 14.136

Review 5.  NMR illuminates intrinsic disorder.

Authors:  H Jane Dyson; Peter E Wright
Journal:  Curr Opin Struct Biol       Date:  2021-05-02       Impact factor: 7.786

6.  Sequence-Dependent Correlated Segments in the Intrinsically Disordered Region of ChiZ.

Authors:  Alan Hicks; Cristian A Escobar; Timothy A Cross; Huan-Xiang Zhou
Journal:  Biomolecules       Date:  2020-06-23

7.  Reorientational Dynamics of Amyloid-β from NMR Spin Relaxation and Molecular Simulation.

Authors:  Nasrollah Rezaei-Ghaleh; Giacomo Parigi; Markus Zweckstetter
Journal:  J Phys Chem Lett       Date:  2019-06-06       Impact factor: 6.475

Review 8.  Recent Advances in Computational Protocols Addressing Intrinsically Disordered Proteins.

Authors:  Supriyo Bhattacharya; Xingcheng Lin
Journal:  Biomolecules       Date:  2019-04-11

9.  NMR characterization of solvent accessibility and transient structure in intrinsically disordered proteins.

Authors:  Christoph Hartlmüller; Emil Spreitzer; Christoph Göbl; Fabio Falsone; Tobias Madl
Journal:  J Biomol NMR       Date:  2019-07-11       Impact factor: 2.835

10.  Depicting Conformational Ensembles of α-Synuclein by Single Molecule Force Spectroscopy and Native Mass Spectroscopy.

Authors:  Roberta Corti; Claudia A Marrano; Domenico Salerno; Stefania Brocca; Antonino Natalello; Carlo Santambrogio; Giuseppe Legname; Francesco Mantegazza; Rita Grandori; Valeria Cassina
Journal:  Int J Mol Sci       Date:  2019-10-19       Impact factor: 5.923

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