| Literature DB >> 33942631 |
Xiaoyan Song1, Dongmei Wang2, Baji Ben1, Chenghua Xiao1, Liyan Bai1, Han Xiao3, Wenyan Zhang1, Wanchao Li2, Jingying Jia2, Yujuan Qi1.
Abstract
OBJECTIVE: To investigate the associations between interleukin (IL) gene polymorphisms and susceptibility to gastric cancer in the Qinghai population, China.Entities:
Keywords: Gastric cancer; IL-1B rs1143634; cancer risk; interleukin (IL) genes; polymorphisms; susceptibility
Mesh:
Substances:
Year: 2021 PMID: 33942631 PMCID: PMC8113958 DOI: 10.1177/03000605211004755
Source DB: PubMed Journal: J Int Med Res ISSN: 0300-0605 Impact factor: 1.671
Primer sequences, amplicon lengths and genotypes of interleukin gene polymorphisms.
| SNP | 2nd-PCRPa 1st-PCRPb | AMPc | UEP_SEQd | Genotype |
|---|---|---|---|---|
| rs1143627 | ACGTTGGATGCCTCGAAGAGGTTTGGTATC | 98 | TTCTCCCTCGCTGTTTTTAT | AG, AA, GG |
| ACGTTGGATGTCTCAGCCTCCTACTTCTGC | ||||
| rs1143634 | ACGTTGGATGGTGCTCCACATTTCAGAACC | 100 | ACATTTCAGAACCTATCTTCTT | GA, GG, AA |
| ACGTTGGATGAGTGATCGTACAGGTGCATC | ||||
| rs4073 | ACGTTGGATGCTGAAGCTCCACAATTTGGT | 118 | CACAATTTGGTGAATTATCAA | TA, TT, AA |
| ACGTTGGATGGCCACTCTAGTACTATATCTG | ||||
| rs1800896 | ACGTTGGATGATTCCATGGAGGCTGGATAG | 107 | tCCTATCCCTACTTCCCC | CT, CC, TT |
| ACGTTGGATGGACAACACTACTAAGGCTTC | ||||
| rs4778889 | ACGTTGGATGAGTCCCTCCACACTCAAAGC | 99 | gCAAAGCCTTTTGTTCCTATCA | CT, CC, TT |
| ACGTTGGATGCATGGGCTCATACTGTTGAC | ||||
| rs917997 | ACGTTGGATGCTCAGACTTCTTTTGGCCAC | 113 | ATGCTAGAACCAAGCTAT | CT, CC, TT |
| ACGTTGGATGAGCTAAGGTCAAAACGCTGG | ||||
| rs1179251 | ACGTTGGATGACCTGCATTCTAGCCCTATC | 101 | ACTGACCATCCCCAGAAT | CG, CC, GG |
| ACGTTGGATGGGTTGGGATCTTAGCTTGTC | ||||
| rs2015620 | ACGTTGGATGAAGTTCTCCAGCCAGTGGTC | 102 | GTGGTCTCAACTCAATCTTC | TA, TT, AA |
| ACGTTGGATGAAGAATTTAGGCGGCAGTGG |
SNP, single nucleotide polymorphism.
a2nd-PCRP, secondary (reverse) amplification primer (including secondary tag);
b1st-PCRP, primary (forward) amplification primer (including primer tag);
cAMP, amplicon length (in bases; including primer tags and maximum SNP sequence length);
dUEP_SEQ, extend primer sequence (used in the single-base extension reaction for genotype identification).
Demographic and clinical characteristics of patients with gastric cancer and cancer-free controls from the Qinghai region.
Study group | ||||
|---|---|---|---|---|
| Characteristic | Cases | Controls | χ²-value | Statistical significance |
| Number | 190 (50.53) | 186 (49.47) | ||
| Age | 8.987 | |||
| Years | 56.76 ± 11.584 | 48.26 ± 5.917 | ||
| <60 years | 108 (56.84) | 179 (96.24) | ||
| ≥60 years | 82 (43.16) | 7 (3.76) | ||
| Sex | 21.476 | |||
| Male | 148 (77.89) | 103 (55.38) | ||
| Female | 42 (22.11) | 83 (44.62) | ||
| Nationality | 10.413 | |||
| Han population | 124 (65.26) | 149 (80.11) | ||
| Minority nationalities | 66 (34.74) | 37 (19.89) | ||
| Tobacco smoking | 0.251 | NS | ||
| Yes | 68 (35.79) | 62 (33.33) | ||
| No | 122 (64.21) | 124 (66.67) | ||
| Alcohol drinking | 0.638 | NS | ||
| Yes | 68 (35.79) | 74 (39.78) | ||
| No | 122 (64.21) | 112 (60.22) | ||
| 25.094 | ||||
| Positive | 152 (80.00) | 104 (55.91) | ||
| Negative | 38 (20.00) | 82 (44.09) | ||
| Family history of cancer | 2.465 | NS | ||
| Yes | 17 (8.95) | 9 (4.84) | ||
| No | 173 (91.05) | 177 (95.16) | ||
Data presented as n (%) prevalence or mean ± SD.
NS, no statistically significant between-group difference (P > 0.05; χ2-test).
Genotype and allele frequencies of interleukin gene polymorphisms in patients with gastric cancer and healthy controls from the Qinghai region.
Study group | ||||
|---|---|---|---|---|
| SNP genotype | Cases | Controls | χ2-value | Statistical significance |
| IL-1B rs1143627 | ||||
| AG | 95 (50.00) | 99 (53.22) | 0.627 | NS |
| AA | 46 (24.21) | 39 (20.97) | ||
| GG | 49 (25.79) | 48 (25.81) | ||
| A allele | 187 (49.21) | 177 (47.58) | 0.2 | NS |
| G allele | 193 (50.79) | 195 (52.42) | ||
| IL-1B rs1143634 | ||||
| GA | 19 (10.00) | 8 (4.30) | 7.311 | |
| GG | 168 (88.42) | 178 (95.70) | ||
| AA | 3 (1.58) | 0 (0.00) | ||
| G allele | 355 (93.42) | 364 (97.85) | 8.786 | |
| A allele | 25 (6.58) | 8 (2.15) | ||
| IL-8 rs4073 | ||||
| TA | 88 (46.32) | 89 (47.85) | 0.143 | NS |
| TT | 72 (37.89) | 67 (36.02) | ||
| AA | 30 (15.79) | 30 (16.13) | ||
| T allele | 232 (61.05) | 223 (59.95) | 0.096 | NS |
| A allele | 148 (38.95) | 149 (40.05) | ||
| IL-10 rs1800896 | ||||
| CT | 30 (15.79) | 31 (16.67) | 0.445 | NSa |
| CC | 2 (1.05) | 1 (0.54) | ||
| TT | 158 (83.16) | 154 (82.80) | ||
| C allele | 34 (8.95) | 33 (8.87) | 0.001 | NS |
| T allele | 346 (91.05) | 339 (91.13) | ||
| IL-16 rs4778889 | ||||
| CT | 75 (39.47) | 83 (44.62) | 1.055 | NS |
| CC | 12 (6.32) | 10 (5.38) | ||
| TT | 103 (54.21) | 93 (50.00) | ||
| C allele | 99 (26.05) | 103 (27.69) | 0.256 | NS |
| T allele | 281 (73.95) | 269 (72.31) | ||
| IL-18 rs917997 | ||||
| CT | 83 (43.68) | 92 (49.46) | 1.294 | NS |
| CC | 56 (29.47) | 48 (25.81) | ||
| TT | 51 (26.84) | 46 (24.73) | ||
| C allele | 195 (51.32) | 188 (50.54) | 0.046 | NS |
| T allele | 185 (48.68) | 184 (49.46) | ||
| IL-22 rs1179251 | ||||
| CG | 73 (38.42) | 89 (47.85) | 4.878 | NS |
| CC | 94 (49.47) | 84 (45.16) | ||
| GG | 23 (12.11) | 13 (6.99) | ||
| C allele | 261 (68.68) | 257 (69.09) | 0.014 | NS |
| G allele | 119 (31.32) | 115 (30.91) | ||
| IL-32 rs2015620 | ||||
| TA | 84 (44.21) | 94 (50.54) | 1.579 | NS |
| TT | 55 (28.95) | 46 (24.73) | ||
| AA | 51 (26.84) | 46 (24.73) | ||
| T allele | 194 (51.05) | 186 (50.00) | 0.083 | NS |
| A allele | 186 (48.95) | 186 (50.00) | ||
Data presented as n (%) prevalence.
SNP, single nucleotide polymorphism.
aAnalysed using Fisher’s exact test.
NS, no statistically significant between-group difference (P > 0.05; χ2-test).
Association between gastric cancer risk and interleukin gene polymorphisms in the Qinghai population.
Study group | ||||
|---|---|---|---|---|
| SNP genotype | Cases | Controls | OR (95% CIs) | Statistical significance |
| IL-1B rs1143627 | ||||
| AA | 46 (24.21) | 39 (20.97) | 1.00 | |
| AG | 95 (50.00) | 99 (53.22) | 1.700 (0.912, 3.168) | NS |
| GG | 49 (25.79) | 48 (25.81) | 1.746 (0.861, 3.544) | NS |
| AG+GG | 144 (75.79) | 147 (79.03) | 1.715 (0.949, 3.099) | NS |
| IL-1B rs1143634 | ||||
| GG | 168 (88.42) | 178 (95.70) | 1.00 | |
| GA | 19 (10.00) | 8 (4.30) | 0.242 (0.088, 0.670) | |
| AA | 3 (1.58) | 0 (0.00) | 0.000 (0.000) | NS |
| GA+AA | 22 (11.58) | 8 (4.30) | 0.227 (0.084, 0.618) | |
| IL-8 rs4073 | ||||
| TT | 72 (37.89) | 67 (36.02) | 1.00 | |
| TA | 88 (46.32) | 89 (47.85) | 0.684 (0.327, 1.433) | NS |
| AA | 30 (15.79) | 30 (16.13) | 0.968 (0.475, 1.974) | NS |
| TA+AA | 118 (62.11) | 119 (63.98) | 1.427 (0.860, 2.368) | NS |
| IL-10 rs1800896 | ||||
| CC | 2 (1.05) | 1 (0.54) | 1.00 | |
| CT | 30 (15.79) | 31 (16.67) | 4.238 (0.243, 73.902) | NS |
| TT | 158 (83.16) | 154 (82.80) | 3.17 (0.192, 52.317) | NS |
| CT+TT | 188 (98.95) | 185 (99.46) | 3.309 (0.200, 54.640) | NS |
| IL-16 rs4778889 | ||||
| CC | 12 (6.32) | 10 (5.38) | 1.00 | |
| CT | 75 (39.47) | 83 (44.62) | 1.088 (0.388, 3.048) | NS |
| TT | 103 (54.21) | 93 (50.00) | 0.941 (0.340, 2.603) | NS |
| CT+TT | 178 (93.68) | 176 (94.62) | 1.004 (0.372, 2.708) | NS |
| IL-18 rs917997 | ||||
| CC | 56 (29.47) | 48 (25.81) | 1.00 | |
| CT | 83 (43.68) | 92 (49.46) | 1.343 (0.739, 2.440) | NS |
| TT | 51 (26.84) | 46 (24.73) | 0.744 (0.381, 1.454) | NS |
| CT+TT | 134 (70.53) | 138 (74.19) | 1.080 (0.622, 1.873) | NS |
| IL-22 rs1179251 | ||||
| CC | 94 (49.47) | 84 (45.16) | 1.00 | |
| CG | 73 (38.42) | 89 (47.85) | 1.687 (0.997, 2.853) | NS |
| GG | 23 (12.11) | 13 (6.99) | 0.565 (0.234, 1.366) | NS |
| CG+GG | 96 (50.53) | 102 (54.84) | 1.378 (0.841, 2.257) | NS |
| IL-32 rs2015620 | ||||
| TT | 55 (28.95) | 46 (24.73) | 1.00 | |
| TA | 84 (44.21) | 94 (50.54) | 1.363 (0.754, 2.464) | NS |
| AA | 51 (26.84) | 46 (24.73) | 1.409 (0.723, 2.748) | NS |
| TA+AA | 135 (71.05) | 140 (75.27) | 1.379 (0.793, 2.397) | NS |
Data presented as n (%) prevalence.
SNP, single nucleotide polymorphism; OR, odds ratio; CI, confidence interval.
NS, no statistically significant correlation (P > 0.05).