| Literature DB >> 22279522 |
Huiping Xue1, Jianjun Liu, Bing Lin, Zheng Wang, Jianhua Sun, Gang Huang.
Abstract
BACKGROUND: Potential functional allele A/T single nucleotide polymorphism (SNP) of Interleukin 8 (IL-8) promoter -251 has been implicated in gastric cancer risk.Entities:
Mesh:
Substances:
Year: 2012 PMID: 22279522 PMCID: PMC3261138 DOI: 10.1371/journal.pone.0028083
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Study Characteristics of genotypes in gastric cancer cases and controls in the analysis of Interleukin-8 -251 promoter polymorphism.
| First author | Year of publication | Quality assessment scores | Genotyping method | Total sample size | Number of controls | Number of cases | Study location | Ethnic group | P values for HWE | Controls,genotypes(n) | All Cases,genotypes(n) | ||||
| TT | TA | AA | TT | TA | AA | ||||||||||
| Savage SA et al. | 2004 | 7 | Multiplex | 517 | 429 | 88 | China | Asians | 0.8848131 | 147 | 207 | 75 | 26 | 39 | 23 |
| Lu W et al. | 2005 | 6.5 | DHPLC | 550 | 300 | 250 | China | Asians | 0.5158484 | 119 | 144 | 37 | 94 | 102 | 54 |
| Taguchi A et al. | 2005 | 7 | RFLP | 648 | 252 | 396 | Japan | Asians | 0.9940137 | 125 | 105 | 22 | 161 | 191 | 44 |
| Lee WP et al. | 2005 | 6 | RFLP | 778 | 308 | 470 | Taiwan China | Asians | 0.1430368 | 108 | 138 | 62 | 198 | 213 | 59 |
| Ohyauchi M et al. | 2005 | 7.5 | Direct | 456 | 244 | 212 | Japan | Asians | 0.8470500 | 149 | 84 | 11 | 93 | 106 | 13 |
| Zeng ZR et al. | 2005 | 6.5 | RDB | 402 | 196 | 206 | China | Asians | 0.0218768 | 43 | 114 | 39 | 37 | 110 | 59 |
| Kamali-Sarvestani E et al. | 2006 | 5.75 | ASO | 172 | 153 | 19 | Iran | Asians | 0.7975756 | 57 | 74 | 22 | 4 | 6 | 9 |
| Shirai K et al. | 2006 | 5.5 | RFLP | 649 | 468 | 181 | Japan | Asians | 0.8304604 | 211 | 208 | 49 | 83 | 78 | 20 |
| Savage SA et al. | 2006 | 7.5 | Taqman/MGB Eclipse | 715 | 428 | 287 | Poland | Caucasians | 0.3914650 | 106 | 205 | 117 | 71 | 140 | 76 |
| Kamangar F et al. | 2006 | 6 | MGB Eclipse/Taqman | 319 | 207 | 112 | Finland | Caucasians | 0.0549341 | 72 | 111 | 24 | 42 | 56 | 14 |
| Garza-Gonzalez E et al. | 2007 | 3.75 | ARMS | 285 | 207 | 78 | Mexico | Hispanic | 0.4918145 | 68 | 97 | 42 | 15 | 47 | 16 |
| Crusius JB et al. | 2008 | 8.5 | Real-time PCR | 1375 | 1139 | 236 | European | Caucasians | 0.7055677 | 315 | 574 | 250 | 75 | 113 | 48 |
| Canedo P et al. | 2008 | 6.5 | Taqman | 1026 | 693 | 333 | Portugal | Caucasians | 0.4597191 | 203 | 353 | 137 | 111 | 169 | 53 |
| Ye BD et al. | 2009 | 5.75 | RFLP | 359 | 206 | 153 | Korea | Asians | 0.5529341 | 97 | 86 | 23 | 54 | 82 | 17 |
| Kang JM et al. | 2009 | 7 | RFLP | 656 | 322 | 334 | Korea | Asians | 0.2256995 | 147 | 148 | 27 | 126 | 159 | 49 |
| Ko KP et al. | 2009 | 7 | SNaPshot | 389 | 308 | 81 | Korea | Asians | 0.1553548 | 135 | 146 | 27 | 34 | 35 | 12 |
| Zhang L et al. | 2010 | 8.5 | RFLP | 1023 | 504 | 519 | China | Asians | 0.7541397 | 160 | 251 | 93 | 130 | 261 | 128 |
| Song B et al. | 2010 | 5.5 | RFLP | 398 | 190 | 208 | China | Asians | 0.3894032 | 68 | 96 | 26 | 64 | 108 | 36 |
Data of cardia type of gastric cancer were accessible;
Data of noncardia type of gastric cancer were accessible;
*Data of sporadic diffuse-type of gastric cancer were accessible;
Data of intestinal-type of gastric cancer were accessible.
Data of the status of Helicobacter pylori of gastric cancer were accessible.
Here participants, though treated as Asians geographically in this study, should be better considered as separate Iranian population conducted in our subgroup analysis due to its complex ethnic components.
Here participants in this study should be treated as Mexican or Hispanic population rather than Caucasian population [26], [45].
Here control 1 in that study was selected as the control group in our meta-analysis because the gastric cancer participants were the same and control 2 was only used for further validation of the findings [20]. RFLP: Restriction fragment length polymorphisms; DHPLC: PCR-based denaturing high-performance liquid chromatography; Taqman: TaqMan polymerase chain reaction method; SSCP: Single strand conformation polymorphism; Multiplex: Multiplex polymerase chain reaction method (a variant of PCR in which two or more loci are simultaneously amplified in the same reaction); Direct: Direct sequence analysis of polymerase chain reaction; RDB: polymerase chain reaction and reverse dot blot; ASO: oligonucleotide allele specific polymerase chain reaction; MGB Eclipse: MGB Eclipse Assay polymerase chain reaction method; ARMS: Amplification refractory mutation system polymerase chain reaction; SNaPshot: the SNaPshot assay which provides detection of certain SNPs.
Figure 1The flow chart of literature search and study selection.
Figure 2Odds ratios (ORs) for associations between IL-8 -251 A/T SNP and gastric cancer risk among different ethnicities, in order of increasing publication year, 2004–2010.
Studies were entered into the meta-analysis sequentially by year of publication. The sizes of the squares indicate the relative weight of each study. Weights were derived from random-effects analysis. Bars, 95% confidence interval (CI). A) The IL-8 -251 AA genotype versus TT genotype; B) The IL-8 -251 AA genotype versus TA genotype.
Figure 3Odds ratios (ORs) for associations between IL-8 -251 A/T SNP and gastric cancer risk among geographically Asian participants from China, Taiwan China, Japan, Korea, and Iran.
The sizes of the squares indicate the relative weight of each study. Bars, 95% confidence interval (CI). A) The IL-8 -251 AA genotype versus TT genotype; B) The IL-8 -251 AA genotype versus TA genotype.
Stratification for the test of heterogeneity on IL-8 -251 AA vs TA based on a codominant model.
| Q-test | OR(95%CI) | P value | |||
| chi-squared | d.f. | p | |||
| Overall | 35.96 | 17 | 0.005 | 1.17(0.98–1.40) | 0.092 |
| Large sample | 23.18 | 9 | 0.006 | 1.12 (0.90–1.40) | 0.305 |
| Small-and-moderate sample | 11.75 | 7 | 0.109 | 1.25 (0.98–1.59) | 0.067 |
| High quality | 17.88 | 10 | 0.057 | 1.25 (1.03–1.51) | 0.023 |
| Low-and-moderate quality | 14.28 | 6 | 0.027 | 1.03 (0.71–1.49) | 0.892 |
| Publication before or in 2005 | 17.20 | 5 | 0.004 | 1.23(0.82–1.85) | 0.326 |
| Publication after 2005 | 18.40 | 11 | 0.073 | 1.13 (0.93–1.37) | 0.222 |
| Caucasians | 0.98 | 3 | 0.806 | 0.93 (0.76–1.13) | 0.453 |
| Asians | 27.54 | 12 | 0.006 | 1.31 (1.04–1.66) | 0.024 |
| Non-cardia type | 4.56 | 7 | 0.714 | 0.85 (0.70–1.04) | 0.122 |
| Cardia type | 4.77 | 4 | 0.311 | 1.22 (0.97–1.55) | 0.092 |
| Intestinal type | 4.96 | 6 | 0.549 | 1.08 (0.83–1.40) | 0.583 |
| Diffuse type | 6.42 | 3 | 0.093 | 0.89 (0.52–1.53) | 0.672 |
| Hp positive | 14.11 | 3 | 0.003 | 1.22 (0.62–2.43) | 0.564 |
| Hp negative | 2.43 | 2 | 0.297 | 0.88 (0.57–1.38) | 0.589 |
| PCR-RFLP genotyping | 12.46 | 6 | 0.052 | 1.07 (0.82–1.41) | 0.607 |
| Other genotyping | 23.23 | 10 | 0.010 | 1.25 (0.97–1.61) | 0.084 |
*: M-H ORs (95% CI), otherwise D+L ORs (95% CI).
: P values of M-H estimates, otherwise P values of D+L estimates.
Stratification for the test of heterogeneity on IL-8 -251 AA vs TT based on a codominant model.
| Q-test | OR(95%CI) | P value | |||
| chi-squared | d.f. | p | |||
| Overall | 51.03 | 17 | 0.000 | 1.32 (1.05–1.66) | 0.018 |
| Large sample | 38.78 | 9 | 0.000 | 1.16 (0.86–1.57) | 0.340 |
| Small-and-moderate sample | 6.08 | 7 | 0.530 | 1.62 (1.25–2.10) | 0.000 |
| High quality | 27.54 | 10 | 0.002 | 1.38 (1.07–1.78) | 0.013 |
| Low-and-moderate quality | 20.36 | 6 | 0.002 | 1.23 (0.77–1.97) | 0.388 |
| Publication before or in 2005 | 22.46 | 5 | 0.000 | 1.39(0.85–2.28) | 0.191 |
| Publication after 2005 | 28.50 | 11 | 0.003 | 1.28 (0.99–1.66) | 0.063 |
| Caucasians | 1.42 | 3 | 0.700 | 0.83 (0.66–1.04) | 0.100 |
| Asians | 33.20 | 12 | 0.001 | 1.52 (1.16–2.00) | 0.003 |
| Non-cardia type | 19.22 | 7 | 0.008 | 1.05 (0.73–1.51) | 0.783 |
| Cardia type | 12.12 | 4 | 0.016 | 1.20 (0.72–2.00) | 0.481 |
| Intestinal type | 7.00 | 6 | 0.321 | 1.37 (1.05–1.79) | 0.021 |
| Diffuse type | 12.14 | 3 | 0.007 | 1.24 (0.57–2.70) | 0.595 |
| Hp positive | 22.19 | 4 | 0.000 | 1.56 (0.76–3.21) | 0.230 |
| Hp negative | 4.88 | 3 | 0.181 | 0.99 (0.59–1.65) | 0.967 |
| PCR-RFLP genotyping | 24.26 | 6 | 0.000 | 1.28 (0.86–1.89) | 0.223 |
| Other genotyping | 26.45 | 10 | 0.003 | 1.34 (1.00–1.80) | 0.048 |
*: M-H ORs (95% CI), otherwise D+L ORs (95% CI).
: P values of M-H estimates, otherwise P values of D+L estimates.
Figure 4Odds ratios (ORs) for associations between IL-8 -251 A/T SNP and gastric cancer risk with different H pylori infection status.
H pylori infection status includes H pylori positive cases versus positive controls and H pylori negative cases versus negative controls. The sizes of the squares indicate the relative weight of each study. Bars, 95% confidence interval (CI). A) The IL-8 -251 AA genotype versus TT genotype; B) The IL-8 -251 AA genotype versus TA genotype.
Figure 5Influence analysis of the summary odds ratio coefficients on the association for the IL-8 -251 AA genotype with gastric cancer risk.
Results were computed by omitting each study (on the left) in turn. Bars, 95% confidence interval. Meta-analysis random-effects estimates (exponential form) were used.
Figure 6Cumulative meta-analysis of associations between the IL-8 -251 AA genotype, as compared with the TT genotype, and gastric cancer risk among Asians.
Horizontal line, the accumulation of estimates as each study was added rather than the estimate of a single study. A) sorted primarily by total number of sample size; B) sorted primarily by publication time.
Figure 7Funnel plot of publication bias for IL-8 -251 A/T SNP (AA vs TA).
Note: Funnel plot with pseudo 95% confidence limits was used.