Literature DB >> 33926465

Nonsense-mediated RNA decay and its bipolar function in cancer.

Gonçalo Nogueira1,2, Rafael Fernandes1,2, Juan F García-Moreno1,2, Luísa Romão3,4.   

Abstract

Nonsense-mediated decay (NMD) was first described as a quality-control mechanism that targets and rapidly degrades aberrant mRNAs carrying premature termination codons (PTCs). However, it was found that NMD also degrades a significant number of normal transcripts, thus arising as a mechanism of gene expression regulation. Based on these important functions, NMD regulates several biological processes and is involved in the pathophysiology of a plethora of human genetic diseases, including cancer. The present review aims to discuss the paradoxical, pro- and anti-tumorigenic roles of NMD, and how cancer cells have exploited both functions to potentiate the disease. Considering recent genetic and bioinformatic studies, we also provide a comprehensive overview of the present knowledge of the advantages and disadvantages of different NMD modulation-based approaches in cancer therapy, reflecting on the challenges imposed by the complexity of this disease. Furthermore, we discuss significant advances in the recent years providing new perspectives on the implications of aberrant NMD-escaping frameshifted transcripts in personalized immunotherapy design and predictive biomarker optimization. A better understanding of how NMD differentially impacts tumor cells according to their own genetic identity will certainly allow for the application of novel and more effective personalized treatments in the near future.

Entities:  

Keywords:  Biomarker; Cancer therapy; Environmental stress; Immunotherapy; Neoantigen; Nonsense-mediated RNA decay (NMD); Oncogene; Tumor microenvironment; Tumor suppressor gene

Year:  2021        PMID: 33926465     DOI: 10.1186/s12943-021-01364-0

Source DB:  PubMed          Journal:  Mol Cancer        ISSN: 1476-4598            Impact factor:   27.401


  208 in total

Review 1.  Nonsense-mediated mRNA decay: an intricate machinery that shapes transcriptomes.

Authors:  Søren Lykke-Andersen; Torben Heick Jensen
Journal:  Nat Rev Mol Cell Biol       Date:  2015-09-23       Impact factor: 94.444

Review 2.  The role of alternative splicing coupled to nonsense-mediated mRNA decay in human disease.

Authors:  Paulo J da Costa; Juliane Menezes; Luísa Romão
Journal:  Int J Biochem Cell Biol       Date:  2017-07-22       Impact factor: 5.085

Review 3.  Stress and the nonsense-mediated RNA decay pathway.

Authors:  Alexandra E Goetz; Miles Wilkinson
Journal:  Cell Mol Life Sci       Date:  2017-05-13       Impact factor: 9.261

4.  Identification of hundreds of novel UPF1 target transcripts by direct determination of whole transcriptome stability.

Authors:  Hidenori Tani; Naoto Imamachi; Kazi Abdus Salam; Rena Mizutani; Kenichi Ijiri; Takuma Irie; Tetsushi Yada; Yutaka Suzuki; Nobuyoshi Akimitsu
Journal:  RNA Biol       Date:  2012-10-12       Impact factor: 4.652

Review 5.  Nonsense-mediated mRNA Decay and Cancer.

Authors:  Maximilian W Popp; Lynne E Maquat
Journal:  Curr Opin Genet Dev       Date:  2017-11-07       Impact factor: 5.578

6.  Transcriptome profiling of UPF3B/NMD-deficient lymphoblastoid cells from patients with various forms of intellectual disability.

Authors:  L S Nguyen; L Jolly; C Shoubridge; W K Chan; L Huang; F Laumonnier; M Raynaud; A Hackett; M Field; J Rodriguez; A K Srivastava; Y Lee; R Long; A M Addington; J L Rapoport; S Suren; C N Hahn; J Gamble; M F Wilkinson; M A Corbett; J Gecz
Journal:  Mol Psychiatry       Date:  2011-12-20       Impact factor: 15.992

Review 7.  Nonsense-mediated decay in genetic disease: friend or foe?

Authors:  Jake N Miller; David A Pearce
Journal:  Mutat Res Rev Mutat Res       Date:  2014-05-28       Impact factor: 5.657

8.  Interference of nonsense mutations with eukaryotic messenger RNA stability.

Authors:  R Losson; F Lacroute
Journal:  Proc Natl Acad Sci U S A       Date:  1979-10       Impact factor: 11.205

9.  Unstable beta-globin mRNA in mRNA-deficient beta o thalassemia.

Authors:  L E Maquat; A J Kinniburgh; E A Rachmilewitz; J Ross
Journal:  Cell       Date:  1981-12       Impact factor: 41.582

Review 10.  Organizing principles of mammalian nonsense-mediated mRNA decay.

Authors:  Maximilian Wei-Lin Popp; Lynne E Maquat
Journal:  Annu Rev Genet       Date:  2013       Impact factor: 16.830

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  9 in total

Review 1.  Nonsense-mediated RNA decay: an emerging modulator of malignancy.

Authors:  Kun Tan; Dwayne G Stupack; Miles F Wilkinson
Journal:  Nat Rev Cancer       Date:  2022-05-27       Impact factor: 69.800

2.  A Novel Role of SMG1 in Cholesterol Homeostasis That Depends Partially on p53 Alternative Splicing.

Authors:  Muyang Li; Fredrick Philantrope; Alexandra Diot; Jean-Christophe Bourdon; Patricia Thompson
Journal:  Cancers (Basel)       Date:  2022-07-02       Impact factor: 6.575

3.  TBX5 variant with the novel phenotype of mixed‑type total anomalous pulmonary venous return in Holt‑Oram Syndrome and variable intrafamilial heart defects.

Authors:  Bilal Azab; Dunia Aburizeg; Weizhen Ji; Lauren Jeffries; Nooredeen Jamal Isbeih; Amal Saleh Al-Akily; Hashim Mohammad; Yousef Abu Osba; Mohammad A Shahin; Zain Dardas; Ma'mon M Hatmal; Iyad Al-Ammouri; Saquib Lakhani
Journal:  Mol Med Rep       Date:  2022-05-06       Impact factor: 3.423

4.  A role for AKT1 in nonsense-mediated mRNA decay.

Authors:  Martine Palma; Catherine Leroy; Sophie Salomé-Desnoulez; Elisabeth Werkmeister; Rebekah Kong; Marc Mongy; Hervé Le Hir; Fabrice Lejeune
Journal:  Nucleic Acids Res       Date:  2021-11-08       Impact factor: 16.971

5.  Germline Mutations for Kidney Volume in ADPKD.

Authors:  Hiroshi Kataoka; Rie Yoshida; Naomi Iwasa; Masayo Sato; Shun Manabe; Keiko Kawachi; Shiho Makabe; Taro Akihisa; Yusuke Ushio; Atsuko Teraoka; Ken Tsuchiya; Kosaku Nitta; Toshio Mochizuki
Journal:  Kidney Int Rep       Date:  2021-12-13

Review 6.  DNA and RNA Binding Proteins: From Motifs to Roles in Cancer.

Authors:  Ondrej Bonczek; Lixiao Wang; Sivakumar Vadivel Gnanasundram; Sa Chen; Lucia Haronikova; Filip Zavadil-Kokas; Borivoj Vojtesek
Journal:  Int J Mol Sci       Date:  2022-08-18       Impact factor: 6.208

7.  Glaucocalyxin A Inhibits the Malignancies of Gastric Cancer Cells by Downregulating MDM2 and RNF6 via MiR-3658 and the SMG1-UPF mRNA Decay Pathway.

Authors:  Yanqi Liu; Ping Chen; Daqing Qi; Linhui Chen
Journal:  Front Oncol       Date:  2022-06-22       Impact factor: 5.738

Review 8.  Nonsense-Mediated mRNA Decay, a Finely Regulated Mechanism.

Authors:  Fabrice Lejeune
Journal:  Biomedicines       Date:  2022-01-10

9.  Gene Variants Involved in Nonsense-Mediated mRNA Decay Suggest a Role in Autism Spectrum Disorder.

Authors:  Ana Rita Marques; João Xavier Santos; Hugo Martiniano; Joana Vilela; Célia Rasga; Luísa Romão; Astrid Moura Vicente
Journal:  Biomedicines       Date:  2022-03-13
  9 in total

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