Literature DB >> 33912842

Generative Image Translation for Data Augmentation in Colorectal Histopathology Images.

Jerry Wei1, Arief Suriawinata2, Louis Vaickus2, Bing Ren2, Xiaoying Liu2, Jason Wei1, Saeed Hassanpour1.   

Abstract

We present an image translation approach to generate augmented data for mitigating data imbalances in a dataset of histopathology images of colorectal polyps, adenomatous tumors that can lead to colorectal cancer if left untreated. By applying cycle-consistent generative adversarial networks (CycleGANs) to a source domain of normal colonic mucosa images, we generate synthetic colorectal polyp images that belong to diagnostically less common polyp classes. Generated images maintain the general structure of their source image but exhibit adenomatous features that can be enhanced with our proposed filtration module, called Path-Rank-Filter. We evaluate the quality of generated images through Turing tests with four gastrointestinal pathologists, finding that at least two of the four pathologists could not identify generated images at a statistically significant level. Finally, we demonstrate that using CycleGAN-generated images to augment training data improves the AUC of a convolutional neural network for detecting sessile serrated adenomas by over 10%, suggesting that our approach might warrant further research for other histopathology image classification tasks.

Entities:  

Year:  2019        PMID: 33912842      PMCID: PMC8076951     

Source DB:  PubMed          Journal:  Proc Mach Learn Res


  9 in total

1.  A learning method for the class imbalance problem with medical data sets.

Authors:  Der-Chiang Li; Chiao-Wen Liu; Susan C Hu
Journal:  Comput Biol Med       Date:  2010-03-26       Impact factor: 4.589

2.  Image Synthesis in Multi-Contrast MRI With Conditional Generative Adversarial Networks.

Authors:  Salman Uh Dar; Mahmut Yurt; Levent Karacan; Aykut Erdem; Erkut Erdem; Tolga Cukur
Journal:  IEEE Trans Med Imaging       Date:  2019-02-26       Impact factor: 10.048

3.  Differential Data Augmentation Techniques for Medical Imaging Classification Tasks.

Authors:  Zeshan Hussain; Francisco Gimenez; Darvin Yi; Daniel Rubin
Journal:  AMIA Annu Symp Proc       Date:  2018-04-16

4.  Adversarial Stain Transfer for Histopathology Image Analysis.

Authors:  Aicha Bentaieb; Ghassan Hamarneh
Journal:  IEEE Trans Med Imaging       Date:  2018-03       Impact factor: 10.048

5.  Conditional Generative Adversarial Networks for Metal Artifact Reduction in CT Images of the Ear.

Authors:  Jianing Wang; Yiyuan Zhao; Jack H Noble; Benoit M Dawant
Journal:  Med Image Comput Comput Assist Interv       Date:  2018-09-26

6.  SHIFT: speedy histopathological-to-immunofluorescent translation of whole slide images using conditional generative adversarial networks.

Authors:  Erik A Burlingame; Adam A Margolin; Joe W Gray; Young Hwan Chang
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2018-03-06

7.  Medical Image Synthesis with Context-Aware Generative Adversarial Networks.

Authors:  Dong Nie; Roger Trullo; Jun Lian; Caroline Petitjean; Su Ruan; Qian Wang; Dinggang Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2017-09-04

8.  Deep Learning for Classification of Colorectal Polyps on Whole-slide Images.

Authors:  Bruno Korbar; Andrea M Olofson; Allen P Miraflor; Catherine M Nicka; Matthew A Suriawinata; Lorenzo Torresani; Arief A Suriawinata; Saeed Hassanpour
Journal:  J Pathol Inform       Date:  2017-07-25

9.  MRI Cross-Modality Image-to-Image Translation.

Authors:  Qianye Yang; Nannan Li; Zixu Zhao; Xingyu Fan; Eric I-Chao Chang; Yan Xu
Journal:  Sci Rep       Date:  2020-02-28       Impact factor: 4.379

  9 in total
  5 in total

1.  MiNuGAN: Dual Segmentation of Mitoses and Nuclei Using Conditional GANs on Multi-center Breast H&E Images.

Authors:  Salar Razavi; Fariba D Khameneh; Hana Nouri; Dimitrios Androutsos; Susan J Done; April Khademi
Journal:  J Pathol Inform       Date:  2022-01-20

2.  Novel Pixelwise Co-Registered Hematoxylin-Eosin and Multiphoton Microscopy Image Dataset for Human Colon Lesion Diagnosis.

Authors:  Artzai Picon; Elena Terradillos; Luisa F Sánchez-Peralta; Sara Mattana; Riccardo Cicchi; Benjamin J Blover; Nagore Arbide; Jacques Velasco; Mª Carmen Etzezarraga; Francesco S Pavone; Estibaliz Garrote; Cristina L Saratxaga
Journal:  J Pathol Inform       Date:  2022-02-07

3.  Modelling intra-muscular contraction dynamics using in silico to in vivo domain translation.

Authors:  Hazrat Ali; Johannes Umander; Robin Rohlén; Oliver Röhrle; Christer Grönlund
Journal:  Biomed Eng Online       Date:  2022-07-08       Impact factor: 3.903

4.  Bladder cancer prognosis using deep neural networks and histopathology images.

Authors:  Wayner Barrios; Behnaz Abdollahi; Manu Goyal; Qingyuan Song; Matthew Suriawinata; Ryland Richards; Bing Ren; Alan Schned; John Seigne; Margaret Karagas; Saeed Hassanpour
Journal:  J Pathol Inform       Date:  2022-08-28

5.  TilGAN: GAN for Facilitating Tumor-Infiltrating Lymphocyte Pathology Image Synthesis With Improved Image Classification.

Authors:  Monjoy Saha; Xiaoyuan Guo; Ashish Sharma
Journal:  IEEE Access       Date:  2021-05-28       Impact factor: 3.367

  5 in total

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