Literature DB >> 29854165

Differential Data Augmentation Techniques for Medical Imaging Classification Tasks.

Zeshan Hussain1, Francisco Gimenez2, Darvin Yi2, Daniel Rubin2.   

Abstract

Data augmentation is an essential part of training discriminative Convolutional Neural Networks (CNNs). A variety of augmentation strategies, including horizontal flips, random crops, and principal component analysis (PCA), have been proposed and shown to capture important characteristics of natural images. However, while data augmentation has been commonly used for deep learning in medical imaging, little work has been done to determine which augmentation strategies best capture medical image statistics, leading to more discriminative models. This work compares augmentation strategies and shows that the extent to which an augmented training set retains properties of the original medical images determines model performance. Specifically, augmentation strategies such as flips and gaussian filters lead to validation accuracies of 84% and 88%, respectively. On the other hand, a less effective strategy such as adding noise leads to a significantly worse validation accuracy of 66%. Finally, we show that the augmentation affects mass generation.

Mesh:

Year:  2018        PMID: 29854165      PMCID: PMC5977656     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  2 in total

1.  scikit-image: image processing in Python.

Authors:  Stéfan van der Walt; Johannes L Schönberger; Juan Nunez-Iglesias; François Boulogne; Joshua D Warner; Neil Yager; Emmanuelle Gouillart; Tony Yu
Journal:  PeerJ       Date:  2014-06-19       Impact factor: 2.984

2.  A deep learning architecture for image representation, visual interpretability and automated basal-cell carcinoma cancer detection.

Authors:  Angel Alfonso Cruz-Roa; John Edison Arevalo Ovalle; Anant Madabhushi; Fabio Augusto González Osorio
Journal:  Med Image Comput Comput Assist Interv       Date:  2013
  2 in total
  38 in total

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Journal:  J Radiat Res       Date:  2021-03-10       Impact factor: 2.724

Review 2.  Designing deep learning studies in cancer diagnostics.

Authors:  Andreas Kleppe; Ole-Johan Skrede; Sepp De Raedt; Knut Liestøl; David J Kerr; Håvard E Danielsen
Journal:  Nat Rev Cancer       Date:  2021-01-29       Impact factor: 60.716

3.  Active Appearance Model Induced Generative Adversarial Network for Controlled Data Augmentation.

Authors:  Jianfei Liu; Christine Shen; Tao Liu; Nancy Aguilera; Johnny Tam
Journal:  Med Image Comput Comput Assist Interv       Date:  2019-10-10

4.  Promise and Potential Pitfalls: Re-creating Images or Generating New Images for AI Modeling.

Authors:  Heang-Ping Chan
Journal:  Radiol Artif Intell       Date:  2021-06-23

5.  Automated Stanford classification of aortic dissection using a 2-step hierarchical neural network at computed tomography angiography.

Authors:  Li-Ting Huang; Yi-Shan Tsai; Cheng-Fu Liou; Tsung-Han Lee; Po-Tsun Paul Kuo; Han-Sheng Huang; Chien-Kuo Wang
Journal:  Eur Radiol       Date:  2021-12-02       Impact factor: 5.315

6.  Data Augmentation Based on Substituting Regional MRIs Volume Scores.

Authors:  Tuo Leng; Qingyu Zhao; Chao Yang; Zhufu Lu; Ehsan Adeli; Kilian M Pohl
Journal:  Large Scale Annot Biomed Data Export Label Synth Hardw Aware Learn Med Imaging Comput Assist Interv (2019)       Date:  2019-10-24

7.  Three-dimensional Deep Convolutional Neural Networks for Automated Myocardial Scar Quantification in Hypertrophic Cardiomyopathy: A Multicenter Multivendor Study.

Authors:  Ahmed S Fahmy; Ulf Neisius; Raymond H Chan; Ethan J Rowin; Warren J Manning; Martin S Maron; Reza Nezafat
Journal:  Radiology       Date:  2019-11-12       Impact factor: 11.105

8.  Data Augmentation and Transfer Learning to Improve Generalizability of an Automated Prostate Segmentation Model.

Authors:  Thomas H Sanford; Ling Zhang; Stephanie A Harmon; Jonathan Sackett; Dong Yang; Holger Roth; Ziyue Xu; Deepak Kesani; Sherif Mehralivand; Ronaldo H Baroni; Tristan Barrett; Rossano Girometti; Aytekin Oto; Andrei S Purysko; Sheng Xu; Peter A Pinto; Daguang Xu; Bradford J Wood; Peter L Choyke; Baris Turkbey
Journal:  AJR Am J Roentgenol       Date:  2020-10-14       Impact factor: 3.959

9.  DeepNeuro: an open-source deep learning toolbox for neuroimaging.

Authors:  Andrew Beers; James Brown; Ken Chang; Katharina Hoebel; Jay Patel; K Ina Ly; Sara M Tolaney; Priscilla Brastianos; Bruce Rosen; Elizabeth R Gerstner; Jayashree Kalpathy-Cramer
Journal:  Neuroinformatics       Date:  2021-01

10.  Deep reasoning neural network analysis to predict language deficits from psychometry-driven DWI connectome of young children with persistent language concerns.

Authors:  Jeong-Won Jeong; Soumyanil Banerjee; Min-Hee Lee; Nolan O'Hara; Michael Behen; Csaba Juhász; Ming Dong
Journal:  Hum Brain Mapp       Date:  2021-05-05       Impact factor: 5.038

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