Literature DB >> 24508742

Progress toward an efficient panel of SNPs for ancestry inference.

Kenneth K Kidd1, William C Speed2, Andrew J Pakstis2, Manohar R Furtado3, Rixun Fang3, Abeer Madbouly4, Martin Maiers4, Mridu Middha4, Françoise R Friedlaender5, Judith R Kidd2.   

Abstract

Many panels of ancestry informative single nucleotide polymorphisms have been proposed in recent years for various purposes including detecting stratification in biomedical studies and determining an individual's ancestry in a forensic context. All of the panels have limitations in their generality and efficiency for routine forensic work. Some panels have used only a few populations to validate them. Some panels are based on very large numbers of SNPs thereby limiting the ability of others to test different populations. We have been working toward an efficient and globally useful panel of ancestry informative markers that is comprised of a small number of highly informative SNPs. We have developed a panel of 55 SNPs analyzed on 73 populations from around the world. We present the details of the panel and discuss its strengths and limitations.
Copyright © 2014 The Authors. Published by Elsevier Ireland Ltd.. All rights reserved.

Keywords:  AIM; Ancestry; Population differentiation; SNP; Structure

Mesh:

Year:  2014        PMID: 24508742     DOI: 10.1016/j.fsigen.2014.01.002

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  53 in total

1.  Inference of biogeographical ancestry across central regions of Eurasia.

Authors:  O Bulbul; G Filoglu; T Zorlu; H Altuncul; A Freire-Aradas; J Söchtig; Y Ruiz; M Klintschar; S Triki-Fendri; A Rebai; C Phillips; M V Lareu; Á Carracedo; P M Schneider
Journal:  Int J Legal Med       Date:  2015-08-20       Impact factor: 2.686

2.  Selection of highly informative SNP markers for population affiliation of major US populations.

Authors:  Xiangpei Zeng; Ranajit Chakraborty; Jonathan L King; Bobby LaRue; Rodrigo S Moura-Neto; Bruce Budowle
Journal:  Int J Legal Med       Date:  2015-12-08       Impact factor: 2.686

3.  A single-tube 27-plex SNP assay for estimating individual ancestry and admixture from three continents.

Authors:  Yi-Liang Wei; Li Wei; Lei Zhao; Qi-Fan Sun; Li Jiang; Tao Zhang; Hai-Bo Liu; Jian-Gang Chen; Jian Ye; Lan Hu; Cai-Xia Li
Journal:  Int J Legal Med       Date:  2015-04-02       Impact factor: 2.686

4.  Genetics and brain morphology.

Authors:  Lachlan T Strike; Baptiste Couvy-Duchesne; Narelle K Hansell; Gabriel Cuellar-Partida; Sarah E Medland; Margaret J Wright
Journal:  Neuropsychol Rev       Date:  2015-03-14       Impact factor: 7.444

5.  Developmental validations of a self-developed 39 AIM-InDel panel and its forensic efficiency evaluations in the Shaanxi Han population.

Authors:  Xingru Zhang; Chunmei Shen; Xiaoye Jin; Yuxin Guo; Tong Xie; Bofeng Zhu
Journal:  Int J Legal Med       Date:  2021-04-27       Impact factor: 2.686

6.  A panel of 130 autosomal single-nucleotide polymorphisms for ancestry assignment in five Asian populations and in Caucasians.

Authors:  Hsiao-Lin Hwa; Chih-Peng Lin; Tsun-Ying Huang; Po-Hsiu Kuo; Wei-Hsin Hsieh; Chun-Yen Lin; Hsiang-I Yin; Li-Hui Tseng; James Chun-I Lee
Journal:  Forensic Sci Med Pathol       Date:  2017-04-24       Impact factor: 2.007

7.  Exploring the ancestry differentiation and inference capacity of the 28-plex AISNPs.

Authors:  Wei-Qi Hao; Jing Liu; Li Jiang; Jun-Ping Han; Ling Wang; Jiu-Ling Li; Quan Ma; Chao Liu; Hui-Jun Wang; Cai-Xia Li
Journal:  Int J Legal Med       Date:  2018-06-07       Impact factor: 2.686

8.  A single nucleotide polymorphism panel for individual identification and ancestry assignment in Caucasians and four East and Southeast Asian populations using a machine learning classifier.

Authors:  Hsiao-Lin Hwa; Ming-Yih Wu; Chih-Peng Lin; Wei Hsin Hsieh; Hsiang-I Yin; Tsui-Ting Lee; James Chun-I Lee
Journal:  Forensic Sci Med Pathol       Date:  2019-01-16       Impact factor: 2.007

9.  Case report: on the use of the HID-Ion AmpliSeq™ Ancestry Panel in a real forensic case.

Authors:  C Hollard; C Keyser; T Delabarde; A Gonzalez; C Vilela Lamego; V Zvénigorosky; B Ludes
Journal:  Int J Legal Med       Date:  2016-07-28       Impact factor: 2.686

10.  Assessment of the Precision ID Ancestry panel.

Authors:  Muna Al-Asfi; Dennis McNevin; Bhavik Mehta; Daniel Power; Michelle E Gahan; Runa Daniel
Journal:  Int J Legal Med       Date:  2018-03-19       Impact factor: 2.686

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