Literature DB >> 33867908

An automated framework for compiling and integrating chemical hazard data.

Leora Vegosen1,2, Todd M Martin2.   

Abstract

Comparative chemical hazard assessment, which compares hazards for several endpoints across several chemicals, can be used for a variety of purposes including alternatives assessment and the prioritization of chemicals for further assessment. A new framework was developed to compile and integrate chemical hazard data for several human health and ecotoxicity endpoints from public online sources including hazardous chemical lists, Globally Harmonized System hazard codes (H-codes) or hazard categories from government health agencies, experimental quantitative toxicity values, and predicted values using Quantitative Structure-Activity Relationship (QSAR) models. QSAR model predictions were obtained using EPA's Toxicity Estimation Software Tool. Java programming was used to download hazard data, convert data from each source into a consistent score record format, and store the data in a database. Scoring criteria based on the EPA's Design for the Environment Program Alternatives Assessment Criteria for Hazard Evaluation were used to determine ordinal hazard scores (i.e., low, medium, high, or very high) for each score record. Different methodologies were assessed for integrating data from multiple sources into one score for each hazard endpoint for each chemical. The chemical hazard assessment (CHA) Database developed in this study currently contains more than 990,000 score records for more than 85,000 chemicals. The CHA Database and the methods used in its development may contribute to several cheminformatics, public health, and environmental activities.

Entities:  

Keywords:  Chemical hazard assessment; Cheminformatics; Computational toxicology; Environmental health; Globally Harmonized System (GHS); Quantitative Structure–Activity Relationships (QSARs)

Year:  2020        PMID: 33867908      PMCID: PMC8048128          DOI: 10.1007/s10098-019-01795-w

Source DB:  PubMed          Journal:  Clean Technol Environ Policy        ISSN: 1618-954X            Impact factor:   3.636


  14 in total

1.  Parameter uncertainty and variability in evaluative fate and exposure models.

Authors:  E G Hertwich; T E McKone; W S Pease
Journal:  Risk Anal       Date:  1999-12       Impact factor: 4.000

2.  Update on EPA's ToxCast program: providing high throughput decision support tools for chemical risk management.

Authors:  Robert Kavlock; Kelly Chandler; Keith Houck; Sid Hunter; Richard Judson; Nicole Kleinstreuer; Thomas Knudsen; Matt Martin; Stephanie Padilla; David Reif; Ann Richard; Daniel Rotroff; Nisha Sipes; David Dix
Journal:  Chem Res Toxicol       Date:  2012-05-15       Impact factor: 3.739

3.  An open framework for automated chemical hazard assessment based on GreenScreen for Safer Chemicals: A proof of concept.

Authors:  Kristopher Wehage; Panan Chenhansa; Julie M Schoenung
Journal:  Integr Environ Assess Manag       Date:  2016-06-04       Impact factor: 2.992

4.  ToxCast Chemical Landscape: Paving the Road to 21st Century Toxicology.

Authors:  Ann M Richard; Richard S Judson; Keith A Houck; Christopher M Grulke; Patra Volarath; Inthirany Thillainadarajah; Chihae Yang; James Rathman; Matthew T Martin; John F Wambaugh; Thomas B Knudsen; Jayaram Kancherla; Kamel Mansouri; Grace Patlewicz; Antony J Williams; Stephen B Little; Kevin M Crofton; Russell S Thomas
Journal:  Chem Res Toxicol       Date:  2016-07-20       Impact factor: 3.739

5.  Linking Molecular Structure via Functional Group to Chemical Literature for Establishing a Reaction Lineage for Application to Alternatives Assessment.

Authors:  William M Barrett; Sudhakar Takkellapati; Kidus Tadele; Todd M Martin; Michael A Gonzalez
Journal:  ACS Sustain Chem Eng       Date:  2019-04-15       Impact factor: 8.198

6.  Profiling the activity of environmental chemicals in prenatal developmental toxicity studies using the U.S. EPA's ToxRefDB.

Authors:  Thomas B Knudsen; Matthew T Martin; Robert J Kavlock; Richard S Judson; David J Dix; Amar V Singh
Journal:  Reprod Toxicol       Date:  2009-04-10       Impact factor: 3.143

Review 7.  The utility of structure-activity relationship (SAR) models for prediction and covariate selection in developmental toxicity: comparative analysis of logistic regression and decision tree models.

Authors:  V C Arena; N B Sussman; S Mazumdar; S Yu; O T Macina
Journal:  SAR QSAR Environ Res       Date:  2004-02       Impact factor: 3.000

8.  Profiling the reproductive toxicity of chemicals from multigeneration studies in the toxicity reference database.

Authors:  Matthew T Martin; Elizabeth Mendez; Daniel G Corum; Richard S Judson; Robert J Kavlock; Daniel M Rotroff; David J Dix
Journal:  Toxicol Sci       Date:  2009-04-10       Impact factor: 4.849

9.  Risk Assessment and Alternatives Assessment: Comparing Two Methodologies.

Authors:  Margaret H Whittaker
Journal:  Risk Anal       Date:  2015-12-22       Impact factor: 4.000

10.  The CompTox Chemistry Dashboard: a community data resource for environmental chemistry.

Authors:  Antony J Williams; Christopher M Grulke; Jeff Edwards; Andrew D McEachran; Kamel Mansouri; Nancy C Baker; Grace Patlewicz; Imran Shah; John F Wambaugh; Richard S Judson; Ann M Richard
Journal:  J Cheminform       Date:  2017-11-28       Impact factor: 5.514

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  1 in total

1.  A Framework for Utilizing High-Resolution Mass Spectrometry and Nontargeted Analysis in Rapid Response and Emergency Situations.

Authors:  Allison L Phillips; Antony J Williams; Jon R Sobus; Elin M Ulrich; Jennifer Gundersen; Christina Langlois-Miller; Seth R Newton
Journal:  Environ Toxicol Chem       Date:  2021-11-18       Impact factor: 4.218

  1 in total

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