Literature DB >> 33847983

Gene Excision by Dual-Guide CRISPR-Cas9.

Michael Spagnuolo1, Mark Blenner2,3.   

Abstract

CRISPR-Cas9 is frequently used for creating double-strand DNA breaks that result in indels through non-homologous end joining. Indels can revert to wild-type sequence and require sequencing or complex assays to measure. Cutting by two guide RNAs can lead to single indels at either cut site or simultaneous cutting at both sites and repair leading to gene excision.

Keywords:  CRISPR-Cas9; Gene excision; Genome editing; Metabolic engineering; Synthetic biology; Yarrowia lipolytica

Year:  2021        PMID: 33847983     DOI: 10.1007/978-1-0716-1414-3_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  14 in total

Review 1.  Synthetic Biology Expands the Industrial Potential of Yarrowia lipolytica.

Authors:  Kelly A Markham; Hal S Alper
Journal:  Trends Biotechnol       Date:  2018-06-04       Impact factor: 19.536

2.  Lipid production in Yarrowia lipolytica is maximized by engineering cytosolic redox metabolism.

Authors:  Kangjian Qiao; Thomas M Wasylenko; Kang Zhou; Peng Xu; Gregory Stephanopoulos
Journal:  Nat Biotechnol       Date:  2017-01-16       Impact factor: 54.908

3.  Harnessing Yarrowia lipolytica lipogenesis to create a platform for lipid and biofuel production.

Authors:  John Blazeck; Andrew Hill; Leqian Liu; Rebecca Knight; Jarrett Miller; Anny Pan; Peter Otoupal; Hal S Alper
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

4.  Standardized Markerless Gene Integration for Pathway Engineering in Yarrowia lipolytica.

Authors:  Cory Schwartz; Murtaza Shabbir-Hussain; Keith Frogue; Mark Blenner; Ian Wheeldon
Journal:  ACS Synth Biol       Date:  2016-12-22       Impact factor: 5.110

5.  Synthetic RNA Polymerase III Promoters Facilitate High-Efficiency CRISPR-Cas9-Mediated Genome Editing in Yarrowia lipolytica.

Authors:  Cory M Schwartz; Murtaza Shabbir Hussain; Mark Blenner; Ian Wheeldon
Journal:  ACS Synth Biol       Date:  2016-01-07       Impact factor: 5.110

Review 6.  Oleaginous yeast for biofuel and oleochemical production.

Authors:  Michael Spagnuolo; Allison Yaguchi; Mark Blenner
Journal:  Curr Opin Biotechnol       Date:  2019-03-12       Impact factor: 9.740

7.  Production of omega-3 eicosapentaenoic acid by metabolic engineering of Yarrowia lipolytica.

Authors:  Zhixiong Xue; Pamela L Sharpe; Seung-Pyo Hong; Narendra S Yadav; Dongming Xie; David R Short; Howard G Damude; Ross A Rupert; John E Seip; Jamie Wang; Dana W Pollak; Michael W Bostick; Melissa D Bosak; Daniel J Macool; Dieter H Hollerbach; Hongxiang Zhang; Dennis M Arcilla; Sidney A Bledsoe; Kevin Croker; Elizabeth F McCord; Bjorn D Tyreus; Ethel N Jackson; Quinn Zhu
Journal:  Nat Biotechnol       Date:  2013-07-21       Impact factor: 54.908

Review 8.  Engineering yeast for utilization of alternative feedstocks.

Authors:  Allison Yaguchi; Michael Spagnuolo; Mark Blenner
Journal:  Curr Opin Biotechnol       Date:  2018-01-11       Impact factor: 9.740

9.  Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems.

Authors:  James E DiCarlo; Julie E Norville; Prashant Mali; Xavier Rios; John Aach; George M Church
Journal:  Nucleic Acids Res       Date:  2013-03-04       Impact factor: 16.971

10.  A Survey of Validation Strategies for CRISPR-Cas9 Editing.

Authors:  Monica F Sentmanat; Samuel T Peters; Colin P Florian; Jon P Connelly; Shondra M Pruett-Miller
Journal:  Sci Rep       Date:  2018-01-17       Impact factor: 4.379

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