| Literature DB >> 33805056 |
Małgorzata Starek1, Alina Plenis2, Marta Zagrobelna1, Monika Dąbrowska1.
Abstract
Lipophilicity study of selected NSAIDs, the group of the bioactive compounds usually used in humans and animals medicine, with the use of experimental and calculation methods was evaluated. LogP values are proposed and compared as descriptors of the lipophilicity of eleven compounds (from oxicams and coxibs). Obtained data were designated by thin-layer chromatography (TLC) in various chromatographic conditions, with stationary phases with different properties. The mobile phase systems were prepared by mixing the respective amounts of water and organic modifier, methanol and acetone, in the range of 30 to 80% (v/v) in 5% increments. Retention parameters (RF, RM and RM0) were calculated and statistically evaluated to establish correlations. All experimentally determined RM0 values were compared with partition coefficients obtained by computational methods using linear regression analysis. Moreover, in order to extract information about the lipophilicity of compounds from large retention datasets, two chemometric approaches, namely principal component analysis (PCA) and cluster analysis (CA) were carried out. Established models of lipophilicity may have the potential to predict the biological activity of a number of drugs. The presented knowledge may also be of use during drug discovery processes, broadening the knowledge of potential ways to modify the physicochemical properties of chemical compounds.Entities:
Keywords: NSAIDs; chemometric methods; lipophilicity; stationary phases; thin-layer chromatography
Year: 2021 PMID: 33805056 PMCID: PMC8064060 DOI: 10.3390/pharmaceutics13040440
Source DB: PubMed Journal: Pharmaceutics ISSN: 1999-4923 Impact factor: 6.321
Figure 1A plot of the relationship of RM0 values on the type of stationary phase for the tested substances in the methanol/water mobile phase.
Figure 2A plot of the relationship of RM0 values on the type of stationary phase for the tested substances in the acetone/water mobile phase.
Comparison of the value of the RM0 parameter for the investigated drugs with the use of different stationary phases in the methanol/water and acetone/water system.
| Compound | RP-18 | RP-8 | RP-2 | CN | DIOL | NH2 |
|---|---|---|---|---|---|---|
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| P | 1.7048 | 2.1593 | 0.4712 | 1.0852 | 0.1564 | −0.1828 |
| M | 1.4589 | 1.8891 | 0.4114 | 0.6562 | 0.0194 | −0.1844 |
| T | 1.1124 | 1.9067 | 0.2685 | 0.8520 | 0.3358 | −0.2693 |
| I | 1.1091 | 1.7309 | 0.2371 | 0.7763 | 0.1040 | −0.1833 |
| C | 4.4357 | 3.5729 | 2.6661 | 3.1469 | 0.0391 | 1.0244 |
| E | 3.9062 | 3.2291 | 1.8448 | 2.3315 | 1.3283 | −0.2205 |
| R | 3.2075 | 2.2447 | 1.7526 | 1.5973 | -0.0476 | −0.1692 |
| V | 3.5034 | 2.6716 | 2.2324 | 2.4693 | 0.0301 | −0.2128 |
| CI | 2.9465 | 2.8658 | 2.3930 | 2.6595 | 0.2266 | −0.0704 |
| F | 3.1951 | 3.6857 | 2.3601 | 2.3322 | 0.2161 | −0.2016 |
| RB | 3.5298 | 2.6288 | 1.1382 | 1.7518 | 0.4835 | 0.3421 |
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| P | 0.7572 | 1.3335 | −0.0885 | 0.7418 | 0.1111 | −0.6842 |
| M | 0.6441 | 1.1021 | 0.0757 | 0.7942 | −0.3837 | −0.5738 |
| T | 0.3949 | 0.8081 | −0.1169 | 0.5707 | −0.2370 | −0.6496 |
| I | 0.4835 | 0.9569 | −0.2855 | 0.7894 | 0.7019 | −0.7145 |
| C | 3.7555 | 3.2575 | 2.3937 | 2.4404 | 0.3972 | 1.4811 |
| E | 2.5362 | 2.3901 | 1.7092 | 1.8886 | 0.9818 | −0.5460 |
| R | 2.2732 | 2.0335 | 1.8214 | 1.5941 | −0.0734 | −0.3690 |
| V | 2.6983 | 2.3689 | 2.1503 | 1.8632 | −0.0599 | 0.1163 |
| CI | 3.0736 | 3.0720 | 2.1178 | 1.9163 | −0.1515 | −0.6185 |
| F | 2.5679 | 2.7347 | 2.4046 | 1.9880 | −0.4958 | −0.6517 |
| RB | 2.8466 | 2.1131 | 2.9562 | 1.5364 | 0.0210 | 0.8523 |
The RM0 values for the tested compounds obtained experimentally and with the use of calculation methods.
| Method | P | M | T | I | C | E | R | V | CI | F | RB |
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| RP-18 | 1.70 | 1.46 | 1.11 | 1.11 | 4.44 | 3.91 | 3.21 | 3.50 | 2.95 | 3.20 | 3.53 |
| RP-8 | 2.16 | 1.89 | 1.91 | 1.73 | 3.57 | 3.23 | 2.24 | 2.67 | 2.87 | 3.69 | 2.63 |
| RP-2 | 0.47 | 0.41 | 0.27 | 0.23 | 2.67 | 1.84 | 1.75 | 2.23 | 2.39 | 2.36 | 1.14 |
| CN | 1.09 | 0.66 | 0.85 | 0.78 | 3.15 | 2.33 | 1.60 | 2.47 | 2.66 | 2.33 | 1.75 |
| DIOL | 0.16 | 0.02 | 0.33 | 0.10 | 0.04 | 1.33 | −0.05 | 0.03 | 2.23 | 0.22 | 0.48 |
| NH2 | −0.18 | −0.18 | −0.27 | −0.18 | 1.02 | −0.22 | −0.17 | −0.21 | −0.07 | −0.20 | 0.34 |
| AlogPs | 2.20 | 2.28 | 2.42 | 2.61 | 3.99 | 3.70 | 3.32 | 2.32 | 3.21 | 2.98 | 4.68 |
| ChemAxon | 0.60 | 1.60 | 1.22 | 1.77 | 4.01 | 2.79 | 2.82 | 2.56 | 2.12 | 1.96 | 4.58 |
| XlogP3 | 3.06 | 3.01 | 1.14 | 2.45 | 3.40 | 3.34 | 2.27 | 2.62 | 2.93 | 2.15 | 4.13 |
| AC_logP | 1.70 | 2.28 | 1.55 | 1.40 | 2.63 | 3.35 | 1.43 | 2.63 | 2.32 | 1.52 | 4.09 |
| ALOGP | 1.00 | 0.75 | 0.95 | 0.75 | 4.55 | 3.47 | 2.87 | 2.72 | 3.20 | 2.30 | 4.78 |
| MLOGP | 0.94 | 0.76 | 0.50 | 0.82 | 3.18 | 2.93 | 2.81 | 2.05 | 2.18 | 2.25 | 4.47 |
| XLOGP2 | 2.65 | 1.60 | - | 2.98 | 3.85 | 3.94 | 3.22 | 3.15 | 3.27 | 2.97 | 4.21 |
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| RP-18 | 0.76 | 0.64 | 0.39 | 0.48 | 3.76 | 2.54 | 2.27 | 2.70 | 3.07 | 2.57 | 2.85 |
| RP-8 | 1.33 | 1.10 | 0.81 | 0.96 | 3.26 | 2.39 | 2.03 | 2.37 | 3.07 | 2.73 | 2.11 |
| RP-2 | −0.09 | 0.08 | −0.12 | −0.29 | 2.39 | 1.71 | 1.82 | 2.15 | 2.12 | 2.40 | 2.96 |
| CN | 0.74 | 0.79 | 0.57 | 0.79 | 2.44 | 1.89 | 1.59 | 1.86 | 1.92 | 1.99 | 1.54 |
| DIOL | 0.11 | −0.38 | −0.24 | 0.70 | 0.40 | 0.98 | −0.07 | −0.06 | −0.15 | −0.50 | 0.02 |
| NH2 | −0.68 | −0.57 | −0.65 | −0.71 | 1.48 | −0.55 | −0.37 | 0.12 | −0.62 | −0.65 | 0.85 |
| AlogPs | 2.20 | 2.28 | 2.42 | 2.61 | 3.99 | 3.70 | 3.32 | 2.32 | 3.21 | 2.98 | 4.68 |
| ChemAxon | 0.60 | 1.60 | 1.22 | 1.77 | 4.01 | 2.79 | 2.82 | 2.56 | 2.12 | 1.96 | 4.58 |
| XlogP3 | 3.06 | 3.01 | 1.14 | 2.45 | 3.40 | 3.34 | 2.27 | 2.62 | 2.93 | 2.15 | 4.13 |
| AC_logP | 1.70 | 2.28 | 1.55 | 1.40 | 2.63 | 3.35 | 1.43 | 2.63 | 2.32 | 1.52 | 4.09 |
| ALOGP | 1.00 | 0.75 | 0.95 | 0.75 | 4.55 | 3.47 | 2.87 | 2.72 | 3.20 | 2.30 | 4.78 |
| MLOGP | 0.94 | 0.76 | 0.50 | 0.82 | 3.18 | 2.93 | 2.81 | 2.05 | 2.18 | 2.25 | 4.47 |
| XLOGP2 | 2.65 | 1.60 | - | 2.98 | 3.85 | 3.94 | 3.22 | 3.15 | 3.27 | 2.97 | 4.21 |
Figure 3A plot of the relationship of RM0 values for the tested substances obtained experimentally (in the methanol/water mobile phase) and by calculation methods.
Figure 4A plot of the relationship of RM0 values for the tested substances obtained experimentally (in the acetone/water mobile phase) and by calculation methods.
The correlation coefficients (r) obtained for the linear correlation between experimental RM0 values calculated according to equations: RM0(1) = b + a RM0(2) in methanol/water system (white area) and in acetone/water system (grey area); RM0 = b + a logPcalc in methanol/water system (white area) and in acetone/water system (grey area); as well as logPcalc(1) = b + a logPcalc(2) (italic), respectively.
| RP-18 | RP-8 | RP-2 | CN | DIOL | NH2 | AlogPs | ChemAxon | XlogP3 | AC_logP | ALOGP | MLOGP | XLOGP2 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RP-18 | - | 0.9631 | 0.9434 | 0.9689 | 0.0818 | 0.6500 | 0.7089 | 0.7665 | 0.4854 | 0.4854 | 0.9213 | 0.8382 | 0.7306 |
| RP-8 | 0.8375 | - | 0.8703 | 0.9726 | 0.0394 | 0.5023 | 0.5714 | 0.5869 | 0.3986 | 0.3784 | 0.8032 | 0.6948 | 0.5942 |
| RP-2 | 0.8794 | 0.8699 | - | 0.8893 | 0.0746 | 0.5980 | 0.7392 | 0.7973 | 0.4559 | 0.5762 | 0.9077 | 0.8984 | 0.7086 |
| CN | 0.8997 | 0.8994 | 0.9630 | - | 0.1266 | 0.5561 | 0.6043 | 0.6724 | 0.3788 | 0.4065 | 0.8280 | 0.7388 | 0.6479 |
| DIOL | 0.2770 | 0.3095 | 0.0556 | 0.1695 | - | 0.1447 | 0.3048 | 0.2402 | 0.3588 | 0.2904 | 0.2141 | 0.1863 | 0.4908 |
| NH2 | 0.5601 | 0.4639 | 0.4055 | 0.5266 | 0.1358 | - | 0.6676 | 0.8358 | 0.5566 | 0.5857 | 0.7615 | 0.6817 | 0.5766 |
| AlogPs | 0.7169 | 0.5315 | 0.4441 | 0.5232 | 0.3934 | 0.6523 | - |
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| ChemAxon | 0.7841 | 0.4891 | 0.5198 | 0.5761 | 0.1759 | 0.7094 |
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| XlogP3 | 0.5156 | 0.3085 | 0.2234 | 0.5761 | 0.2741 | 0.5335 |
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| AC_logP | 0.4854 | 0.3533 | 0.2585 | 0.3990 | 0.5422 | 0.4203 |
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| ALOGP | 0.5848 | 0.6952 | 0.7237 | 0.7930 | 0.2895 | 0.6763 |
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| MLOGP | 0.8658 | 0.6201 | 0.6163 | 0.6518 | 0.3106 | 0.5629 |
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| XLOGP2 | 0.7635 | 0.5438 | 0.5022 | 0.6344 | 0.4998 | 0.4966 |
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Figure 5The score plots based on the autoscaled lipophicility results for analyzed compounds, studied picturing the objects in a two-dimensional space.
Figure 6The loadings principal component (PC) plots based on the autoscaled lipophicility results for the studied compounds picturing the variables in two-dimensional space.
Figure 7Dendrograms calculated on the basis of the established lipophilicity results for the studied substances using CA approach ((A) objects, (B) variables).