| Literature DB >> 33803639 |
Tú Nguyen-Dumont1,2, James G Dowty3, Jason A Steen1, Anne-Laure Renault1, Fleur Hammet1, Maryam Mahmoodi1, Derrick Theys1, Amanda Rewse1, Helen Tsimiklis1, Ingrid M Winship4,5, Graham G Giles1,3,6, Roger L Milne1,3,6, John L Hopper3, Melissa C Southey1,2,6.
Abstract
Case-control studies of breast cancer have consistently shown that pathogenic variants in CHEK2 are associated with about a 3-fold increased risk of breast cancer. Information about the recurrent protein-truncating variant CHEK2 c.1100delC dominates this estimate. There have been no formal estimates of age-specific cumulative risk of breast cancer for all CHEK2 pathogenic (including likely pathogenic) variants combined. We conducted a population-based case-control-family study of pathogenic CHEK2 variants (26 families, 1071 relatives) and estimated the age-specific cumulative risk of breast cancer using segregation analysis. The estimated hazard ratio for carriers of pathogenic CHEK2 variants (combined) was 4.9 (95% CI 2.5-9.5) relative to non-carriers. The HR for carriers of the CHEK2 c.1100delC variant was estimated to be 3.5 (95% CI 1.02-11.6) and the HR for carriers of all other CHEK2 variants combined was estimated to be 5.7 (95% CI 2.5-12.9). The age-specific cumulative risk of breast cancer was estimated to be 18% (95% CI 11-30%) and 33% (95% CI 21-48%) to age 60 and 80 years, respectively. These findings provide important information for the clinical management of breast cancer risk for women carrying pathogenic variants in CHEK2.Entities:
Keywords: CHEK2; age-specific cumulative risk; breast cancer; genetic risk factors; penetrance; predisposition
Year: 2021 PMID: 33803639 PMCID: PMC8003064 DOI: 10.3390/cancers13061378
Source DB: PubMed Journal: Cancers (Basel) ISSN: 2072-6694 Impact factor: 6.639
Pathogenic and likely pathogenic a CHEK2 variants identified by targeted-sequencing in the case and control probands participating in the Australian Breast Cancer Family Registry.
| Variant Type | HGVS.c b | HGVS.p b | Number of Relatives Who Are Carriers/Tested/Total | Number of Relatives with Breast Cancer Who Are Carriers/Tested/Total | |
|---|---|---|---|---|---|
| Case proband | Nonsense | NM_007194.3:c.1528C>T | NP_009125.1:p.Gln510Ter | 3/5/34 | 1/1/3 |
| NM_007194.3:c.823G>T | NP_009125.1:p.Glu275Ter | 1/1/97 | 0/0/5 | ||
| Frameshift | NM_007194.3:c.1263delT | NP_009125.1:p.Ser422Valfs *15 | 0/0/40 | 0/0/1 | |
| NM_007194.3:c.1263delT | NP_009125.1:p.Ser422Valfs *15 | 3/5/78 | 2/2/3 | ||
| NM_007194.3:c.1100delC | NP_009125.1:p.Thr367Metfs *15 | 2/6/46 | 1/2/4 | ||
| NM_007194.3:c.1100delC | NP_009125.1:p.Thr367Metfs *15 | 2/3/20 | 0/0/0 | ||
| NM_007194.3:c.1100delC | NP_009125.1:p.Thr367Metfs *15 | 0/5/16 | 0/0/1 | ||
| NM_007194.3:c.1100delC | NP_009125.1:p.Thr367Metfs *15 | 4/17/67 | 2/5/10 | ||
| NM_007194.3:c.1100delC | NP_009125.1:p.Thr367Metfs *15 | 2/3/41 | 0/0/0 | ||
| NM_007194.3:c.1100delC | NP_009125.1:p.Thr367Metfs *15 | 1/4/75 | 0/1/1 | ||
| NM_007194.3:c.1100delC | NP_009125.1:p.Thr367Metfs *15 | 1/1/19 | 0/0/0 | ||
| NM_007194.3:c.1100delC | NP_009125.1:p.Thr367Metfs *15 | 2/2/33 | 0/0/0 | ||
| NM_007194.3:c.1100delC | NP_009125.1:p.Thr367Metfs *15 | 0/0/19 | 0/0/0 | ||
| NM_007194.3:c.920dupG | NP_009125.1:p.Glu308Argfs *4 | 1/1/17 | 0/0/0 | ||
| NM_007194.3:c.405delA | NP_009125.1:p.Lys135Asnfs *26 | 0/0/47 | 0/0/2 | ||
| Splice donor | NM_007194.3:c.444+1G>A | 0/0/18 | 0/0/0 | ||
| NM_007194.3:c.319+2T>A c | 2/2/23 | 0/0/0 | |||
| Missense | NM_007194.3:c.349A>G | NP_009125.1:p.Arg117Gly | 3/4/32 | 2/2/2 | |
| NM_007194.3:c.349A>G | NP_009125.1:p.Arg117Gly | 2/12/190 | 1/1/6 | ||
| NM_007194.3:c.349A>G | NP_009125.1:p.Arg117Gly | 1/3/24 | 0/0/1 | ||
| Control proband | Frameshift | NM_007194.3:c.1100delC | NP_009125.1:p.Thr367Metfs *15 | 0/0/41 | 0/0/2 |
| NM_007194.3:c.1100delC | NP_009125.1:p.Thr367Metfs *15 | 0/0/19 | 0/0/0 | ||
| NM_007194.3:c.1100delC | NP_009125.1:p.Thr367Metfs *15 | 0/0/32 | 0/0/0 | ||
| NM_007194.3:c.591delA | NP_009125.1:p.Val198Phefs *7 | 0/0/23 | 0/0/1 | ||
| Missense | NM_007194.3:c.349A>G | NP_009125.1:p.Arg117Gly | 0/0/21 | 0/0/1 | |
| NM_007194.3:c.349A>G | NP_009125.1:p.Arg117Gly | 0/0/13 | 0/0/0 | ||
| NM_007194.3:c.349A>G | NP_009125.1:p.Arg117Gly | 0/0/9 | 0/0/1 |
a According to ClinVar accessed July 2020. b Variant nomenclature according to the Human Genome Variation Society (HGVS), HGVS.c for coding DNA and HGVS.p for protein variants, based on transcript sequence NM_007194.3, +1 as A of ATG start codon. c Proband also found to carry a BRCA1 nonsense variant (NM_007294.3:c.1840A>T).
Average age-specific cumulative risk (penetrance) of breast cancer to various ages, for female, Australian carriers of pathogenic and likely pathogenic CHEK2 variants (combined).
| Age (Years) | Cumulative Risk (%) to Each Given Age, with 95% Confidence Intervals in Parentheses |
|---|---|
| 30 | 0.4 (0.2–0.7) |
| 40 | 2.6 (1.4–5.1) |
| 50 | 9.1 (5.1–16) |
| 60 | 18 (11–30) |
| 70 | 26 (16–40) |
| 80 | 33 (21–48) |
Figure 1Average age-specific cumulative risk (penetrance) of breast cancer, for Australian women (dashed line) and for female carriers of pathogenic and likely pathogenic CHEK2 variants combined (solid line), with confidence intervals for carriers (grey region).