Literature DB >> 33770143

TBDBT: A TB DataBase Template for collection of harmonized TB clinical research data in REDCap, facilitating data standardisation for inter-study comparison and meta-analyses.

Taryn Allie1, Amanda Jackson1, Jon Ambler1,2, Katherine Johnston2, Elsa Du Bruyn1,3, Charlotte Schultz1,3, Linda Boloko1,3, Sean Wasserman1,3, Angharad Davis1, Graeme Meintjes1,3, Robert J Wilkinson1,3,4,5, Nicki Tiffin1,2,6.   

Abstract

Clinical tuberculosis research, both within research groups and across research ecosystems, is often undertaken in isolation using bespoke data collection platforms and applying differing data conventions. This failure to harmonise clinical phenotype data or apply standardised data collection and storage standards in turn limits the opportunity to undertake meta-analyses using data generated across multiple research projects for the same research domain. We have developed the Tuberculosis DataBase Template (TBDBT), a template for the well-supported, free and commonly deployed clinical databasing platform, REDCap. This template can be used to set up a new tuberculosis research database with a built-in set of standardised data conventions, to ensure standardised data capture across research projects and programs. A modular design enables researchers to implement only the modules of the database template that are appropriate for their particular study. The template includes core modules for informed consent data, participant demographics, clinical symptoms and presentation, diagnostic imaging and laboratory tests. Optional modules have been designed for visit scheduling and calendar functionality, clinical trial randomisation, study logistics and operations, and pharmacokinetic data. Additional fields can be added as needed. This REDCap template can facilitate collection of high-quality data for tuberculosis research, providing a tool to ensure better data harmonisation, analysis and meta-analysis.

Entities:  

Year:  2021        PMID: 33770143      PMCID: PMC7996972          DOI: 10.1371/journal.pone.0249165

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  9 in total

1.  Research electronic data capture (REDCap)--a metadata-driven methodology and workflow process for providing translational research informatics support.

Authors:  Paul A Harris; Robert Taylor; Robert Thielke; Jonathon Payne; Nathaniel Gonzalez; Jose G Conde
Journal:  J Biomed Inform       Date:  2008-09-30       Impact factor: 6.317

2.  A pragmatic method for transforming clinical research data from the research electronic data capture "REDCap" to Clinical Data Interchange Standards Consortium (CDISC) Study Data Tabulation Model (SDTM): Development and evaluation of REDCap2SDTM.

Authors:  Keiichi Yamamoto; Keiko Ota; Ippei Akiya; Ayumi Shintani
Journal:  J Biomed Inform       Date:  2017-05-06       Impact factor: 6.317

Review 3.  A tuberculosis biomarker database: the key to novel TB diagnostics.

Authors:  Seda Yerlikaya; Tobias Broger; Emily MacLean; Madhukar Pai; Claudia M Denkinger
Journal:  Int J Infect Dis       Date:  2017-01-31       Impact factor: 3.623

4.  Procurement of shared data instruments for Research Electronic Data Capture (REDCap).

Authors:  Jihad S Obeid; Catherine A McGraw; Brenda L Minor; José G Conde; Robert Pawluk; Michael Lin; Janey Wang; Sean R Banks; Sheree A Hemphill; Rob Taylor; Paul A Harris
Journal:  J Biomed Inform       Date:  2012-11-10       Impact factor: 6.317

5.  The REDCap consortium: Building an international community of software platform partners.

Authors:  Paul A Harris; Robert Taylor; Brenda L Minor; Veida Elliott; Michelle Fernandez; Lindsay O'Neal; Laura McLeod; Giovanni Delacqua; Francesco Delacqua; Jacqueline Kirby; Stephany N Duda
Journal:  J Biomed Inform       Date:  2019-05-09       Impact factor: 6.317

6.  A tuberculosis ontology for host systems biology.

Authors:  David M Levine; Noton K Dutta; Josh Eckels; Charles Scanga; Catherine Stein; Smriti Mehra; Deepak Kaushal; Petros C Karakousis; Hugh Salamon
Journal:  Tuberculosis (Edinb)       Date:  2015-06-30       Impact factor: 3.131

Review 7.  Database resources for the tuberculosis community.

Authors:  Jocelyne M Lew; Chunhong Mao; Maulik Shukla; Andrew Warren; Rebecca Will; Dmitry Kuznetsov; Ioannis Xenarios; Brian D Robertson; Stephen V Gordon; Dirk Schnappinger; Stewart T Cole; Bruno Sobral
Journal:  Tuberculosis (Edinb)       Date:  2013-01-17       Impact factor: 3.131

Review 8.  Clinical Data Acquisition Standards Harmonization importance and benefits in clinical data management.

Authors:  Jagadeeswara Rao Gaddale
Journal:  Perspect Clin Res       Date:  2015 Oct-Dec

9.  A framework for tiered informed consent for health genomic research in Africa.

Authors:  Victoria Nembaware; Katherine Johnston; Alpha A Diallo; Maritha J Kotze; Alice Matimba; Keymanthri Moodley; Godfrey B Tangwa; Rispah Torrorey-Sawe; Nicki Tiffin
Journal:  Nat Genet       Date:  2019-11       Impact factor: 38.330

  9 in total

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