Literature DB >> 28159577

A tuberculosis biomarker database: the key to novel TB diagnostics.

Seda Yerlikaya1, Tobias Broger2, Emily MacLean3, Madhukar Pai4, Claudia M Denkinger1.   

Abstract

New diagnostic innovations for tuberculosis (TB), including point-of-care solutions, are critical to reach the goals of the End TB Strategy. However, despite decades of research, numerous reports on new biomarker candidates, and significant investment, no well-performing, simple and rapid TB diagnostic test is yet available on the market, and the search for accurate, non-DNA biomarkers remains a priority. To help overcome this 'biomarker pipeline problem', FIND and partners are working on the development of a well-curated and user-friendly TB biomarker database. The web-based database will enable the dynamic tracking of evidence surrounding biomarker candidates in relation to target product profiles (TPPs) for needed TB diagnostics. It will be able to accommodate raw datasets and facilitate the verification of promising biomarker candidates and the identification of novel biomarker combinations. As such, the database will simplify data and knowledge sharing, empower collaboration, help in the coordination of efforts and allocation of resources, streamline the verification and validation of biomarker candidates, and ultimately lead to an accelerated translation into clinically useful tools.
Copyright © 2017 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  Biomarkers; Database; Pipeline; Tuberculosis

Mesh:

Substances:

Year:  2017        PMID: 28159577     DOI: 10.1016/j.ijid.2017.01.025

Source DB:  PubMed          Journal:  Int J Infect Dis        ISSN: 1201-9712            Impact factor:   3.623


  18 in total

1.  The TB Portals: an Open-Access, Web-Based Platform for Global Drug-Resistant-Tuberculosis Data Sharing and Analysis.

Authors:  Alex Rosenthal; Andrei Gabrielian; Eric Engle; Darrell E Hurt; Sofia Alexandru; Valeriu Crudu; Eugene Sergueev; Valery Kirichenko; Vladzimir Lapitskii; Eduard Snezhko; Vassili Kovalev; Andrei Astrovko; Alena Skrahina; Jessica Taaffe; Michael Harris; Alyssa Long; Kurt Wollenberg; Irada Akhundova; Sharafat Ismayilova; Aliaksandr Skrahin; Elcan Mammadbayov; Hagigat Gadirova; Rafik Abuzarov; Mehriban Seyfaddinova; Zaza Avaliani; Irina Strambu; Dragos Zaharia; Alexandru Muntean; Eugenia Ghita; Miron Bogdan; Roxana Mindru; Victor Spinu; Alexandra Sora; Catalina Ene; Sergo Vashakidze; Natalia Shubladze; Ucha Nanava; Alexander Tuzikov; Michael Tartakovsky
Journal:  J Clin Microbiol       Date:  2017-09-13       Impact factor: 5.948

2.  The risk factor of false-negative and false-positive for T-SPOT.TB in active tuberculosis.

Authors:  Li Di; Yan Li
Journal:  J Clin Lab Anal       Date:  2017-06-08       Impact factor: 2.352

3.  A systematic review of biomarkers to detect active tuberculosis.

Authors:  Emily MacLean; Tobias Broger; Seda Yerlikaya; B Leticia Fernandez-Carballo; Madhukar Pai; Claudia M Denkinger
Journal:  Nat Microbiol       Date:  2019-02-25       Impact factor: 17.745

4.  TBDBT: A TB DataBase Template for collection of harmonized TB clinical research data in REDCap, facilitating data standardisation for inter-study comparison and meta-analyses.

Authors:  Taryn Allie; Amanda Jackson; Jon Ambler; Katherine Johnston; Elsa Du Bruyn; Charlotte Schultz; Linda Boloko; Sean Wasserman; Angharad Davis; Graeme Meintjes; Robert J Wilkinson; Nicki Tiffin
Journal:  PLoS One       Date:  2021-03-26       Impact factor: 3.240

Review 5.  TBVAC2020: Advancing Tuberculosis Vaccines from Discovery to Clinical Development.

Authors:  Stefan H E Kaufmann; Hazel M Dockrell; Nick Drager; Mei Mei Ho; Helen McShane; Olivier Neyrolles; Tom H M Ottenhoff; Brij Patel; Danielle Roordink; François Spertini; Steffen Stenger; Jelle Thole; Frank A W Verreck; Ann Williams
Journal:  Front Immunol       Date:  2017-10-04       Impact factor: 7.561

6.  CBD: a biomarker database for colorectal cancer.

Authors:  Xueli Zhang; Xiao-Feng Sun; Yang Cao; Benchen Ye; Qiliang Peng; Xingyun Liu; Bairong Shen; Hong Zhang
Journal:  Database (Oxford)       Date:  2018-01-01       Impact factor: 3.451

7.  Biomarkers for diagnosis of childhood tuberculosis: A systematic review.

Authors:  Toyin Omotayo Togun; Emily MacLean; Beate Kampmann; Madhukar Pai
Journal:  PLoS One       Date:  2018-09-13       Impact factor: 3.240

8.  Identification of plasma biomarkers for discrimination between tuberculosis infection/disease and pulmonary non tuberculosis disease.

Authors:  Marco Pio La Manna; Valentina Orlando; Paolo Li Donni; Guido Sireci; Paola Di Carlo; Antonio Cascio; Francesco Dieli; Nadia Caccamo
Journal:  PLoS One       Date:  2018-03-15       Impact factor: 3.240

9.  Implementation of tuberculosis prevention for exposed children, Burkina Faso.

Authors:  Giorgia Sulis; Adjima Combary; Haileyesus Getahun; Saidou Gnanou; Pier Francesco Giorgetti; Arnaud Konseimbo; Susanna Capone; Yohhei Hamada; Annabel Baddeley; Alberto Matteelli
Journal:  Bull World Health Organ       Date:  2018-04-20       Impact factor: 9.408

10.  Structural Prediction and Mutational Analysis of Rv3906c Gene of Mycobacterium tuberculosis H37Rv to Determine Its Essentiality in Survival.

Authors:  Md Amjad Beg; Sonu Chand Thakur; Laxman S Meena
Journal:  Adv Bioinformatics       Date:  2018-08-15
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