Literature DB >> 33760964

Origin of the 16S Ribosomal Molecule from Ancestor tRNAs.

Savio Torres de Farias1,2, Thais Gaudêncio Rêgo3, Marco V José4.   

Abstract

We tested the hypothesis that concatemers of ancestral tRNAs gave rise to the 16S ribosomal RNA. We built an ancestral sequence of proto-tRNAs that showed a significant identity of 51.69% and a percentage of structural identity of 0.941 with the 3' upper domain of 16S ribosomal molecule. We also propose a hypothesis in which the small ribosomal subunit emerged by proto-tRNA fusion and worked as a point to bind RNAs in an open structure configuration. In this context, the two ribosomal subunits initially worked independently, and that the subunit junction, with consequent primitive ribosome formation, was mediated by interactions with tRNA molecules during the primordial genetic code formation.

Keywords:  16S rRNA; Evolution; Origins; Proto-tRNAs; Translation system

Year:  2021        PMID: 33760964     DOI: 10.1007/s00239-021-10002-8

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  10 in total

1.  History of the ribosome and the origin of translation.

Authors:  Anton S Petrov; Burak Gulen; Ashlyn M Norris; Nicholas A Kovacs; Chad R Bernier; Kathryn A Lanier; George E Fox; Stephen C Harvey; Roger M Wartell; Nicholas V Hud; Loren Dean Williams
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-30       Impact factor: 11.205

2.  Suggested phylogeny of tRNAs based on the construction of ancestral sequences.

Authors:  Sávio Torres de Farias
Journal:  J Theor Biol       Date:  2013-07-17       Impact factor: 2.691

3.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Authors:  Koichiro Tamura; Glen Stecher; Daniel Peterson; Alan Filipski; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2013-10-16       Impact factor: 16.240

Review 4.  The evolving ribosome: from non-coded peptide bond formation to sophisticated translation machinery.

Authors:  Chen Davidovich; Matthew Belousoff; Anat Bashan; Ada Yonath
Journal:  Res Microbiol       Date:  2009-07-18       Impact factor: 3.992

Review 5.  tRNA-rRNA sequence matches from inter- and intraspecies comparisons suggest common origins for the two RNAs.

Authors:  D P Bloch; B McArthur; R C Guimarães; J Smith; M P Staves
Journal:  Braz J Med Biol Res       Date:  1989       Impact factor: 2.590

6.  Structural evolution of Glycyl-tRNA synthetases alpha subunit and its implication in the initial organization of the decoding system.

Authors:  Savio Torres de Farias; Daniel Antonino; Thais Gaudêncio Rêgo; Marco V José
Journal:  Prog Biophys Mol Biol       Date:  2018-08-22       Impact factor: 3.667

7.  The Uroboros Theory of Life's Origin: 22-Nucleotide Theoretical Minimal RNA Rings Reflect Evolution of Genetic Code and tRNA-rRNA Translation Machineries.

Authors:  Jacques Demongeot; Hervé Seligmann
Journal:  Acta Biotheor       Date:  2019-08-06       Impact factor: 1.774

8.  Ribosomal history reveals origins of modern protein synthesis.

Authors:  Ajith Harish; Gustavo Caetano-Anollés
Journal:  PLoS One       Date:  2012-03-12       Impact factor: 3.240

9.  Atomic mutagenesis at the ribosomal decoding site.

Authors:  Pius Schrode; Paul Huter; Nina Clementi; Matthias Erlacher
Journal:  RNA Biol       Date:  2016-11-14       Impact factor: 4.652

10.  Comparisons between small ribosomal RNA and theoretical minimal RNA ring secondary structures confirm phylogenetic and structural accretion histories.

Authors:  Jacques Demongeot; Hervé Seligmann
Journal:  Sci Rep       Date:  2020-05-06       Impact factor: 4.379

  10 in total
  3 in total

1.  Origin of life: protoribosome forms peptide bonds and links RNA and protein dominated worlds.

Authors:  Tanaya Bose; Gil Fridkin; Chen Davidovich; Miri Krupkin; Nikita Dinger; Alla H Falkovich; Yoav Peleg; Ilana Agmon; Anat Bashan; Ada Yonath
Journal:  Nucleic Acids Res       Date:  2022-02-28       Impact factor: 16.971

2.  RNP-world: The ultimate essence of life is a ribonucleoprotein process.

Authors:  Sávio Torres de Farias; Francisco Prosdocimi
Journal:  Genet Mol Biol       Date:  2022-09-23       Impact factor: 2.087

Review 3.  Social Networking of Quasi-Species Consortia drive Virolution via Persistence.

Authors:  Luis P Villarreal; Guenther Witzany
Journal:  AIMS Microbiol       Date:  2021-04-30
  3 in total

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