Literature DB >> 35137169

Origin of life: protoribosome forms peptide bonds and links RNA and protein dominated worlds.

Tanaya Bose1, Gil Fridkin1,2, Chen Davidovich1, Miri Krupkin1, Nikita Dinger1, Alla H Falkovich1, Yoav Peleg3, Ilana Agmon4,5, Anat Bashan1, Ada Yonath1.   

Abstract

Although the mode of action of the ribosomes, the multi-component universal effective protein-synthesis organelles, has been thoroughly explored, their mere appearance remained elusive. Our earlier comparative structural studies suggested that a universal internal small RNA pocket-like segment called by us the protoribosome, which is still embedded in the contemporary ribosome, is a vestige of the primordial ribosome. Herein, after constructing such pockets, we show using the "fragment reaction" and its analyses by MALDI-TOF and LC-MS mass spectrometry techniques, that several protoribosome constructs are indeed capable of mediating peptide-bond formation. These findings present strong evidence supporting our hypothesis on origin of life and on ribosome's construction, thus suggesting that the protoribosome may be the missing link between the RNA dominated world and the contemporary nucleic acids/proteins life.
© The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Year:  2022        PMID: 35137169      PMCID: PMC8886871          DOI: 10.1093/nar/gkac052

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  65 in total

1.  High resolution structure of the large ribosomal subunit from a mesophilic eubacterium.

Authors:  J Harms; F Schluenzen; R Zarivach; A Bashan; S Gat; I Agmon; H Bartels; F Franceschi; A Yonath
Journal:  Cell       Date:  2001-11-30       Impact factor: 41.582

2.  On peptide bond formation, translocation, nascent protein progression and the regulatory properties of ribosomes. Derived on 20 October 2002 at the 28th FEBS Meeting in Istanbul.

Authors:  Ilana Agmon; Tamar Auerbach; David Baram; Heike Bartels; Anat Bashan; Rita Berisio; Paola Fucini; Harly A S Hansen; Joerg Harms; Maggie Kessler; Moshe Peretz; Frank Schluenzen; Ada Yonath; Raz Zarivach
Journal:  Eur J Biochem       Date:  2003-06

3.  Toward ribosomal RNA catalytic activity in the absence of protein.

Authors:  Rachel M Anderson; Miyun Kwon; Scott A Strobel
Journal:  J Mol Evol       Date:  2007-04-05       Impact factor: 2.395

4.  Matrix-assisted laser desorption/ionization mass spectrometry of biopolymers.

Authors:  F Hillenkamp; M Karas; R C Beavis; B T Chait
Journal:  Anal Chem       Date:  1991-12-15       Impact factor: 6.986

5.  Protoribosome by quantum kernel energy method.

Authors:  Lulu Huang; Miri Krupkin; Anat Bashan; Ada Yonath; Lou Massa
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-26       Impact factor: 11.205

6.  Origin of the 16S Ribosomal Molecule from Ancestor tRNAs.

Authors:  Savio Torres de Farias; Thais Gaudêncio Rêgo; Marco V José
Journal:  J Mol Evol       Date:  2021-03-24       Impact factor: 2.395

Review 7.  Protocells and RNA Self-Replication.

Authors:  Gerald F Joyce; Jack W Szostak
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-09-04       Impact factor: 10.005

8.  Using electrophoretic mobility shift assays to measure equilibrium dissociation constants: GAL4-p53 binding DNA as a model system.

Authors:  Michael A Heffler; Ryan D Walters; Jennifer F Kugel
Journal:  Biochem Mol Biol Educ       Date:  2012-10-13       Impact factor: 1.160

9.  Catalysis of peptide bond formation by 50 S ribosomal subunits from Escherichia coli.

Authors:  R E Monro
Journal:  J Mol Biol       Date:  1967-05-28       Impact factor: 5.469

10.  Peeling the onion: ribosomes are ancient molecular fossils.

Authors:  Chiaolong Hsiao; Srividya Mohan; Benson K Kalahar; Loren Dean Williams
Journal:  Mol Biol Evol       Date:  2009-07-23       Impact factor: 16.240

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  3 in total

1.  Peptide Bond Formation between Aminoacyl-Minihelices by a Scaffold Derived from the Peptidyl Transferase Center.

Authors:  Mai Kawabata; Kentaro Kawashima; Hiromi Mutsuro-Aoki; Tadashi Ando; Takuya Umehara; Koji Tamura
Journal:  Life (Basel)       Date:  2022-04-12

2.  Structure of a mitochondrial ribosome with fragmented rRNA in complex with membrane-targeting elements.

Authors:  Victor Tobiasson; Ieva Berzina; Alexey Amunts
Journal:  Nat Commun       Date:  2022-10-17       Impact factor: 17.694

3.  RNP-world: The ultimate essence of life is a ribonucleoprotein process.

Authors:  Sávio Torres de Farias; Francisco Prosdocimi
Journal:  Genet Mol Biol       Date:  2022-09-23       Impact factor: 2.087

  3 in total

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