Literature DB >> 33736677

sparrpowR: a flexible R package to estimate statistical power to identify spatial clustering of two groups and its application.

Ian D Buller1,2, Derek W Brown3,4, Rena R Jones5, Mitchell J Machiela4, Timothy A Myers6.   

Abstract

BACKGROUND: Cancer epidemiology studies require sufficient power to assess spatial relationships between exposures and cancer incidence accurately. However, methods for power calculations of spatial statistics are complicated and underdeveloped, and therefore underutilized by investigators. The spatial relative risk function, a cluster detection technique that detects spatial clusters of point-level data for two groups (e.g., cancer cases and controls, two exposure groups), is a commonly used spatial statistic but does not have a readily available power calculation for study design.
RESULTS: We developed sparrpowR as an open-source R package to estimate the statistical power of the spatial relative risk function. sparrpowR generates simulated data applying user-defined parameters (e.g., sample size, locations) to detect spatial clusters with high statistical power. We present applications of sparrpowR that perform a power calculation for a study designed to detect a spatial cluster of incident cancer in relation to a point source of numerous environmental emissions. The conducted power calculations demonstrate the functionality and utility of sparrpowR to calculate the local power for spatial cluster detection.
CONCLUSIONS: sparrpowR improves the current capacity of investigators to calculate the statistical power of spatial clusters, which assists in designing more efficient studies. This newly developed R package addresses a critically underdeveloped gap in cancer epidemiology by estimating statistical power for a common spatial cluster detection technique.

Entities:  

Keywords:  Cancer incidence; Environmental epidemiology; Point pattern; Spatial clustering; Statistical power

Year:  2021        PMID: 33736677      PMCID: PMC7977178          DOI: 10.1186/s12942-021-00267-z

Source DB:  PubMed          Journal:  Int J Health Geogr        ISSN: 1476-072X            Impact factor:   3.918


  15 in total

1.  Analyzing geographic patterns of disease incidence: rates of late-stage colorectal cancer in Iowa.

Authors:  Gerard Rushton; Ika Peleg; Aniruddha Banerjee; Geoffrey Smith; Michele West
Journal:  J Med Syst       Date:  2004-06       Impact factor: 4.460

2.  An application of density estimation to geographical epidemiology.

Authors:  J F Bithell
Journal:  Stat Med       Date:  1990-06       Impact factor: 2.373

3.  Association of incident carcinoma of the endometrium with body weight and fat distribution in older women: early findings of the Iowa Women's Health Study.

Authors:  A R Folsom; S A Kaye; J D Potter; R J Prineas
Journal:  Cancer Res       Date:  1989-12-01       Impact factor: 12.701

4.  Inference based on kernel estimates of the relative risk function in geographical epidemiology.

Authors:  Martin L Hazelton; Tilman M Davies
Journal:  Biom J       Date:  2009-02       Impact factor: 2.207

5.  Non-parametric estimation of spatial variation in relative risk.

Authors:  J E Kelsall; P J Diggle
Journal:  Stat Med       Date:  1995 Nov 15-30       Impact factor: 2.373

Review 6.  Tutorial on kernel estimation of continuous spatial and spatiotemporal relative risk.

Authors:  Tilman M Davies; Jonathan C Marshall; Martin L Hazelton
Journal:  Stat Med       Date:  2017-12-11       Impact factor: 2.373

7.  Residential Proximity to Intensive Animal Agriculture and Risk of Lymphohematopoietic Cancers in the Agricultural Health Study.

Authors:  Jared A Fisher; Laura E Beane Freeman; Jonathan N Hofmann; Aaron Blair; Christine G Parks; Peter S Thorne; Mary H Ward; Rena R Jones
Journal:  Epidemiology       Date:  2020-07       Impact factor: 4.860

8.  A comparison of spatial clustering and cluster detection techniques for childhood leukemia incidence in Ohio, 1996-2003.

Authors:  David C Wheeler
Journal:  Int J Health Geogr       Date:  2007-03-27       Impact factor: 3.918

9.  Simulation-based power calculations for planning a two-stage individual participant data meta-analysis.

Authors:  Joie Ensor; Danielle L Burke; Kym I E Snell; Karla Hemming; Richard D Riley
Journal:  BMC Med Res Methodol       Date:  2018-05-18       Impact factor: 4.615

10.  Simulation-based power and sample size calculation for designing interrupted time series analyses of count outcomes in evaluation of health policy interventions.

Authors:  Wei Liu; Shangyuan Ye; Bruce A Barton; Melissa A Fischer; Colleen Lawrence; Elizabeth J Rahn; Maria I Danila; Kenneth G Saag; Paul A Harris; Stephenie C Lemon; Jeroan J Allison; Bo Zhang
Journal:  Contemp Clin Trials Commun       Date:  2019-10-16
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  1 in total

Review 1.  Spatial components of molecular tissue biology.

Authors:  Giovanni Palla; David S Fischer; Aviv Regev; Fabian J Theis
Journal:  Nat Biotechnol       Date:  2022-02-07       Impact factor: 68.164

  1 in total

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