| Literature DB >> 29776399 |
Joie Ensor1, Danielle L Burke2, Kym I E Snell2, Karla Hemming3, Richard D Riley2.
Abstract
BACKGROUND: Researchers and funders should consider the statistical power of planned Individual Participant Data (IPD) meta-analysis projects, as they are often time-consuming and costly. We propose simulation-based power calculations utilising a two-stage framework, and illustrate the approach for a planned IPD meta-analysis of randomised trials with continuous outcomes where the aim is to identify treatment-covariate interactions.Entities:
Mesh:
Year: 2018 PMID: 29776399 PMCID: PMC5960205 DOI: 10.1186/s12874-018-0492-z
Source DB: PubMed Journal: BMC Med Res Methodol ISSN: 1471-2288 Impact factor: 4.615
Example of inputs required for simulation-based power calculations for an IPD meta-analysis of randomised trials with a continuous outcome
| When considering the power of a summary (overall) treatment effect with model ( | |
| • Number of simulations to conduct (recommend at least 1000) | |
| • Number of trials in the IPD meta-analysis | |
| • Number of patients in each trial, and proportion treated | |
| • Method for estimating the treatment effect in each study separately | |
| • Magnitude of control group mean outcome in each trial (‘baseline risk’) | |
| • Between-trial distribution and magnitude of treatment effects, e.g. normal with a particular mean (summary) effect and between-trial variance (plus any between-trial correlation of baseline risks and treatment effects, if considered relevant) | |
| • Magnitude of residual variance in each trial | |
| • For ANCOVA model: distribution and magnitude of baseline continuous values in each trial e.g. normal with particular mean and variance | |
| • For ANCOVA model: between-trial distribution and magnitude of the prognostic effect of the baseline continuous values, e.g. normal with particular mean and variance | |
| • Approach to use in second stage of the two-stage IPD meta-analysis to pool effect estimates: e.g. fixed effect model or random effects model | |
| • Approach to derive confidence intervals and | |
| Additionally, when considering the power of a treatment-covariate interaction with models ( | |
| • Analysis model and method for estimating the interaction effect in each study separately | |
| • Distribution and magnitude of covariate values in each trial; e.g. normal with chosen mean and variance for a continuous covariate, or Bernoulli for a binary covariate with a chosen probability of being a 1. | |
| • Between-trial distribution and magnitude of treatment-covariate interaction effect, e.g. normal with a particular (summary) mean effect and between-trial variance |
Summary information, available prior to the IPD meta-analysis, about 14 trials that were included in the aggregate data meta-analysis of Thangaratinam et al. [31] and had promised their IPD at the time of the IPD meta-analysis grant application
| Intervention group | Control group | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Author | Year | n | Mean weight gain (kg) | SD of weight gain | Mean BMI at baseline | SD of BMI | n | Mean weight gain (kg) | SD of weight gain | Mean BMI at baseline | SD of BMI | Intervention effect (difference in weight gain) | 95% CI |
| Wolff | 2008 | 23 | 6.60 | 5.50 | 34.90 | 4.00 | 27 | 13.30 | 7.50 | 34.60 | 3.00 | −6.70 | (− 10.31, −3.09) |
| Landon | 2009 | 476 | 2.80 | 4.50 | 30.10 | 5.00 | 455 | 5.00 | 3.30 | 30.20 | 5.10 | −2.20 | (−2.71, −1.69) |
| Rae | 2000 | 67 | 11.56 | 10.80 | 37.90 | 0.70 | 58 | 9.68 | 11.04 | 38.00 | 0.70 | 1.88 | (−1.96, 5.72) |
| Guelinck | 2010 | 42 | 9.80 | 7.60 | 33.75 | 3.79 | 43 | 10.60 | 6.90 | 33.50 | 3.90 | −0.80 | (−3.89, 2.29) |
| Jeffries | 2009 | 124 | 10.70 | 4.21 | NA | NA | 111 | 11.50 | 4.03 | NA | NA | −0.80 | (−1.85, 0.25) |
| Jackson | 2010 | 163 | 15.15 | 5.50 | NA | NA | 164 | 15.24 | 6.67 | NA | NA | −0.09 | (−1.41, 1.23) |
| Hui | 2006 | 24 | 14.20 | 5.30 | 23.40 | 3.90 | 21 | 14.20 | 6.30 | 25.70 | 6.30 | 0.00 | (−3.43, 3.43) |
| Ong | 2009 | 6 | 3.70 | 3.40 | 35.10 | 3.50 | 6 | 5.20 | 1.30 | 35.10 | 3.50 | −1.50 | (−4.41, 1.41) |
| Khaledan | 2010 | 18 | 4.04 | 3.49 | NA | NA | 21 | 5.00 | 3.70 | NA | NA | −0.96 | (−3.22, 1.30) |
| Barakat | 2009 | 72 | 11.50 | 3.70 | 24.30 | 0.50 | 70 | 12.40 | 3.40 | 23.40 | 0.50 | −0.90 | (−2.07, 0.27) |
| Haakstad | 2009 | 52 | 13.00 | 4.00 | NA | NA | 53 | 13.80 | 3.80 | NA | NA | −0.80 | (−2.29, 0.69) |
| Hopkins | 2010 | 47 | 8.20 | 3.49 | 25.50 | 4.30 | 37 | 8.00 | 3.70 | 25.40 | 2.90 | 0.20 | (−1.35, 1.75) |
| Marquez-Sterling | 2000 | 9 | 16.20 | 3.40 | 22.80 | 4.00 | 6 | 15.70 | 4.00 | 24.50 | 4.50 | 0.50 | (−3.40, 4.40) |
| Yeo | 2009 | 60 | 15.90 | 6.80 | NA | NA | 64 | 15.40 | 5.90 | NA | NA | 0.50 | (−1.75, 2.75) |
Parameter values and trial characteristics initially chosen for the simulation-based power calculations of the IPD meta-analysis of pregnancy trials
| Parameter | Chosen values | Interpretation and justification |
|---|---|---|
| No. of trials | 14 | Number of studies included in a previous aggregate data meta-analysis that had promised their IPD |
| Sample sizes | 50, 931, 125, 85, 235, 327, 45, 12, 39, 142, 105, 84, 15, 124 | Total sample size: taken from original trial publications (could breakdown further into the number in control and treatment groups if unequal) |
|
| 13.30, 5.00, 9.68, 10.60, 11.50, 15.24, 14.20, 5.20, 5.00, 12.40, 13.80, 8.00, 15.70, 15.40 | Mean weight gain in the control group: used values as stated in original trial publications |
|
| −0.28 | Prognostic effect of BMI on weight gain: used estimate from a meta-regression of mean weight gain against mean baseline BMI in the control group |
|
| −0.84 | Mean treatment effect across trials: used summary estimate from random effects meta-analysis of published estimates from the 14 trials |
|
| Various: −0.5, − 0.4, − 0.3, − 0.2, − 0.1, −.05, − 0.025, − 0.01 | Magnitude of interaction: used range from extremely large to extremely small interaction effect |
|
| 43.25, 15.57, 119.26, 52.69, 16.98, 37.37, 33.89, 6.63, 12.93, 12.63, 15.22, 12.93, 13.78, 40.53 | Residual variance: used unweighted average of the variance values for treatment and control groups as stated in original trial publications |
|
| 0 | Between-study variance of the prognostic effect of baseline BMI: set to zero for parsimony |
|
| 1.1 | Between-study variance of overall treatment effect: used estimate from random effects meta-analysis of published estimates from the 14 trials |
|
| 0 | Between-study variance of interaction effect: set to zero for parsimony |
| Distribution of baseline BMI values | Study 1: N(34.75, 12.5) | Distribution of key covariate of interest: assumed normality, with means and variances as stated in original trial publication, or if unavailable, values based on those observed from within and between other trials |
Fig. 1Simulation-based power estimates (based on 10,000 replications) for the planned IPD fixed effect meta-analysis* of either 14, 15 or 24 trials for detecting a treatment-BMI interaction effect (λ), across a range of values. * Based on using change score model (4) in each trial followed by fixed effect meta-analysis model (9)
Fig. 2Simulation-based power estimates (based on 10,000 replications) for the planned IPD random effects meta-analysis* of 24 trials for detecting a treatment-BMI interaction when the true effect was − 0.1, conditional on a range of values of the between-study standard deviation (τ) of the interaction effect, when either correctly analysing BMI as continuous or when wrongly analysing BMI as binary (≥ 30 versus < 30). *Based on using change score model (4) in each trial followed by random effects meta-analysis model (9). Standard = DerSimonian and Laird estimation, with p-values and CIs derived using standard normal-based method; HKSJ = DerSimonian and Laird estimation, with p-values and CIs derived using approach of Hartung-Knapp Sidik-Jonkman
Fig. 3Simulation-based power estimates for the planned IPD random effects meta-analysis* of 24 trials for detecting a treatment-BMI interaction when the true effect was − 0.1, conditional on a range of values of the between-study standard deviation (τ) of the interaction effect, and a particular % reduction in residual variances in each trial due to the inclusion of prognostic factors. *Based on using change score model (4) in each trial followed by random effects meta-analysis model (9) with DerSimonian and Laird estimation, and p-values and CIs derived using approach of Hartung-Knapp Sidik-Jonkman
Typical inputs required for simulation-based power calculations for an IPD meta-analysis of randomised trials with a binary or a time-to-event outcome, using a two-stage IPD framework
| When considering the power of a summary (overall) treatment effect: | |
| • Number of IPD meta-analysis datasets to generate | |
| • Number of trials in the IPD meta-analysis | |
| • Number of patients in each trial, and proportion treated | |
| • Analysis model and method for estimating the treatment effect in each study separately | |
| • Distribution and magnitude of treatment effects across all trials, e.g. normal with a particular mean (summary) effect and between-trial variance | |
| • Approach to use in second stage of the two-stage IPD meta-analysis: e.g. fixed effect model (equation | |
| • Approach to derive confidence intervals and | |
| Binary outcomes | |
| • Baseline event risk in the control group in each trial (and any correlation between baseline risk and treatment effect across trials, if relevant) | |
| Time-to-event outcomes | |
| • Maximum length of follow-up in each trial | |
| • Distribution of event times in the control group in each trial, and whether these are related or change across trials (corresponding to the shape of the baseline hazard function in each trial and whether they are the same, different but proportional, or completely distinct) | |
| • Censoring mechanism and amount of censoring over time | |
| • Magnitude of any non-proportional hazards in treatment effect | |
| Additionally, when considering the power of a treatment-covariate interaction: | |
| • Analysis model and method for estimating the interaction effect in each study separately | |
| • Distribution and magnitude of covariate values in each trial; e.g. normal with chosen mean and variance for a continuous covariate, or Bernoulli for a binary covariate with a chosen probability of being a 1. | |
| • Between-trial distribution and magnitude of treatment-covariate interaction effect, e.g. normal with a particular (summary) mean effect and between-trial variance | |
| • Magnitude of any non-proportional hazards in interaction effect |