Literature DB >> 33723452

Nowcasting epidemics of novel pathogens: lessons from COVID-19.

Joseph T Wu1,2, Kathy Leung3,4, Tommy T Y Lam3,4,5,6, Michael Y Ni3,7,8, Carlos K H Wong9,10, J S Malik Peiris3,11, Gabriel M Leung3,4.   

Abstract

Epidemic nowcasting broadly refers to assessing the current state by understanding key pathogenic, epidemiologic, clinical and socio-behavioral characteristics of an ongoing outbreak. Its primary objective is to provide situational awareness and inform decisions on control responses. In the event of large-scale sustained emergencies, such as the COVID-19 pandemic, scientists need to constantly update their aims and analytics with respect to the rapidly evolving emergence of new questions, data and findings in order to synthesize real-time evidence for policy decisions. In this Perspective, we share our views on the functional aims, rationale, data requirements and challenges of nowcasting at different stages of an epidemic, drawing on the ongoing COVID-19 experience. We highlight how recent advances in the computational and laboratory sciences could be harnessed to complement traditional approaches to enhance the scope, timeliness, reliability and utility of epidemic nowcasting.

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Year:  2021        PMID: 33723452     DOI: 10.1038/s41591-021-01278-w

Source DB:  PubMed          Journal:  Nat Med        ISSN: 1078-8956            Impact factor:   53.440


  81 in total

1.  Bats are natural reservoirs of SARS-like coronaviruses.

Authors:  Wendong Li; Zhengli Shi; Meng Yu; Wuze Ren; Craig Smith; Jonathan H Epstein; Hanzhong Wang; Gary Crameri; Zhihong Hu; Huajun Zhang; Jianhong Zhang; Jennifer McEachern; Hume Field; Peter Daszak; Bryan T Eaton; Shuyi Zhang; Lin-Fa Wang
Journal:  Science       Date:  2005-09-29       Impact factor: 47.728

2.  Reconstructing the initial global spread of a human influenza pandemic: A Bayesian spatial-temporal model for the global spread of H1N1pdm.

Authors:  Philippe Lemey; Marc Suchard; Andrew Rambaut
Journal:  PLoS Curr       Date:  2009-09-02

3.  Co-circulation of three camel coronavirus species and recombination of MERS-CoVs in Saudi Arabia.

Authors:  Jamal S M Sabir; Tommy T-Y Lam; Mohamed M M Ahmed; Lifeng Li; Yongyi Shen; Salah E M Abo-Aba; Muhammd I Qureshi; Mohamed Abu-Zeid; Yu Zhang; Mohammad A Khiyami; Njud S Alharbi; Nahid H Hajrah; Meshaal J Sabir; Mohammed H Z Mutwakil; Saleh A Kabli; Faten A S Alsulaimany; Abdullah Y Obaid; Boping Zhou; David K Smith; Edward C Holmes; Huachen Zhu; Yi Guan
Journal:  Science       Date:  2015-12-17       Impact factor: 47.728

4.  Isolation and characterization of viruses related to the SARS coronavirus from animals in southern China.

Authors:  Y Guan; B J Zheng; Y Q He; X L Liu; Z X Zhuang; C L Cheung; S W Luo; P H Li; L J Zhang; Y J Guan; K M Butt; K L Wong; K W Chan; W Lim; K F Shortridge; K Y Yuen; J S M Peiris; L L M Poon
Journal:  Science       Date:  2003-09-04       Impact factor: 47.728

5.  Identifying SARS-CoV-2-related coronaviruses in Malayan pangolins.

Authors:  Tommy Tsan-Yuk Lam; Na Jia; Ya-Wei Zhang; Marcus Ho-Hin Shum; Jia-Fu Jiang; Yi-Gang Tong; Hua-Chen Zhu; Yong-Xia Shi; Xue-Bing Ni; Yun-Shi Liao; Wen-Juan Li; Bao-Gui Jiang; Wei Wei; Ting-Ting Yuan; Kui Zheng; Xiao-Ming Cui; Jie Li; Guang-Qian Pei; Xin Qiang; William Yiu-Man Cheung; Lian-Feng Li; Fang-Fang Sun; Si Qin; Ji-Cheng Huang; Gabriel M Leung; Edward C Holmes; Yan-Ling Hu; Yi Guan; Wu-Chun Cao
Journal:  Nature       Date:  2020-03-26       Impact factor: 49.962

6.  A pneumonia outbreak associated with a new coronavirus of probable bat origin.

Authors:  Peng Zhou; Xing-Lou Yang; Xian-Guang Wang; Ben Hu; Lei Zhang; Wei Zhang; Hao-Rui Si; Yan Zhu; Bei Li; Chao-Lin Huang; Hui-Dong Chen; Jing Chen; Yun Luo; Hua Guo; Ren-Di Jiang; Mei-Qin Liu; Ying Chen; Xu-Rui Shen; Xi Wang; Xiao-Shuang Zheng; Kai Zhao; Quan-Jiao Chen; Fei Deng; Lin-Lin Liu; Bing Yan; Fa-Xian Zhan; Yan-Yi Wang; Geng-Fu Xiao; Zheng-Li Shi
Journal:  Nature       Date:  2020-02-03       Impact factor: 69.504

7.  Coronavirus as a possible cause of severe acute respiratory syndrome.

Authors:  J S M Peiris; S T Lai; L L M Poon; Y Guan; L Y C Yam; W Lim; J Nicholls; W K S Yee; W W Yan; M T Cheung; V C C Cheng; K H Chan; D N C Tsang; R W H Yung; T K Ng; K Y Yuen
Journal:  Lancet       Date:  2003-04-19       Impact factor: 79.321

8.  Full-genome deep sequencing and phylogenetic analysis of novel human betacoronavirus.

Authors:  Matthew Cotten; Tommy T Lam; Simon J Watson; Anne L Palser; Velislava Petrova; Paul Grant; Oliver G Pybus; Andrew Rambaut; Yi Guan; Deenan Pillay; Paul Kellam; Eleni Nastouli
Journal:  Emerg Infect Dis       Date:  2013-05       Impact factor: 6.883

9.  Epidemiologic clues to SARS origin in China.

Authors:  Rui-Heng Xu; Jian-Feng He; Meiron R Evans; Guo-Wen Peng; Hume E Field; De-Wen Yu; Chin-Kei Lee; Hui-Min Luo; Wei-Sheng Lin; Peng Lin; Ling-Hui Li; Wen-Jia Liang; Jin-Yan Lin; Alan Schnur
Journal:  Emerg Infect Dis       Date:  2004-06       Impact factor: 6.883

10.  Effect of changing case definitions for COVID-19 on the epidemic curve and transmission parameters in mainland China: a modelling study.

Authors:  Tim K Tsang; Peng Wu; Yun Lin; Eric H Y Lau; Gabriel M Leung; Benjamin J Cowling
Journal:  Lancet Public Health       Date:  2020-04-21
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  10 in total

1.  Nowcasting the spread of SARS-CoV-2.

Authors:  Hagai Rossman; Eran Segal
Journal:  Nat Microbiol       Date:  2022-01       Impact factor: 17.745

Review 2.  How COVID-19 shaped mental health: from infection to pandemic effects.

Authors:  Brenda W J H Penninx; Michael E Benros; Robyn S Klein; Christiaan H Vinkers
Journal:  Nat Med       Date:  2022-10-03       Impact factor: 87.241

3.  Mental disorders following COVID-19 and other epidemics: a systematic review and meta-analysis.

Authors:  Margaret K Ho; Alina A Bharwani; Candi M C Leung; Hugo Cogo-Moreira; Yishan Wang; Mathew S C Chow; Xiaoyan Fan; Sandro Galea; Gabriel M Leung; Michael Y Ni
Journal:  Transl Psychiatry       Date:  2022-05-17       Impact factor: 7.989

4.  Remdesivir use and risks of acute kidney injury and acute liver injury among patients hospitalised with COVID-19: a self-controlled case series study.

Authors:  Carlos K H Wong; Ivan C H Au; Wing Yiu Cheng; Kenneth K C Man; Kristy T K Lau; Lung Yi Mak; Sing Leung Lui; Matthew S H Chung; Xi Xiong; Eric H Y Lau; Benjamin J Cowling
Journal:  Aliment Pharmacol Ther       Date:  2022-03-22       Impact factor: 9.524

5.  Genomic epidemiology of SARS-CoV-2 under an elimination strategy in Hong Kong.

Authors:  Haogao Gu; Ruopeng Xie; Dillon C Adam; Joseph L-H Tsui; Daniel K Chu; Lydia D J Chang; Sammi S Y Cheuk; Shreya Gurung; Pavithra Krishnan; Daisy Y M Ng; Gigi Y Z Liu; Carrie K C Wan; Samuel S M Cheng; Kimberly M Edwards; Kathy S M Leung; Joseph T Wu; Dominic N C Tsang; Gabriel M Leung; Benjamin J Cowling; Malik Peiris; Tommy T Y Lam; Vijaykrishna Dhanasekaran; Leo L M Poon
Journal:  Nat Commun       Date:  2022-02-08       Impact factor: 14.919

Review 6.  Interspecies Jumping of Bat Coronaviruses.

Authors:  Antonio C P Wong; Susanna K P Lau; Patrick C Y Woo
Journal:  Viruses       Date:  2021-10-29       Impact factor: 5.048

7.  Performance of early warning signals for disease re-emergence: A case study on COVID-19 data.

Authors:  Daniele Proverbio; Françoise Kemp; Stefano Magni; Jorge Gonçalves
Journal:  PLoS Comput Biol       Date:  2022-03-30       Impact factor: 4.475

8.  Human Research Study of Particulate Propagation Distance From Human Respiratory Function.

Authors:  Jonathan Reyes; Bernhard Stiehl; Juanpablo Delgado; Michael Kinzel; Kareem Ahmed
Journal:  J Infect Dis       Date:  2022-04-19       Impact factor: 7.759

9.  Weekly Nowcasting of New COVID-19 Cases Using Past Viral Load Measurements.

Authors:  Athar Khalil; Khalil Al Handawi; Zeina Mohsen; Afif Abdel Nour; Rita Feghali; Ibrahim Chamseddine; Michael Kokkolaras
Journal:  Viruses       Date:  2022-06-28       Impact factor: 5.818

10.  Timeline of SARS-CoV-2 Spread in Italy: Results from an Independent Serological Retesting.

Authors:  Emanuele Montomoli; Giovanni Apolone; Alessandro Manenti; Mattia Boeri; Paola Suatoni; Federica Sabia; Alfonso Marchianò; Valentina Bollati; Ugo Pastorino; Gabriella Sozzi
Journal:  Viruses       Date:  2021-12-30       Impact factor: 5.048

  10 in total

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