Literature DB >> 33717640

Octahedral Trifluoromagnesate, an Anomalous Metal Fluoride Species, Stabilizes the Transition State in a Biological Motor.

Mengyu Ge1, Robert W Molt2,3, Huw T Jenkins1, G Michael Blackburn4, Yi Jin5, Alfred A Antson1.   

Abstract

Isoelectronic metal fluoride transition state analogue (TSA) complexes, MgF3 - and AlF4 -, have proven to be immensely useful in understanding mechanisms of biological motors utilizing phosphoryl transfer. Here we report a previously unobserved octahedral TSA complex, MgF3(H2O)-, in a 1.5 Å resolution Zika virus NS3 helicase crystal structure. 19F NMR provided independent validation and also the direct observation of conformational tightening resulting from ssRNA binding in solution. The TSA stabilizes the two conformations of motif V of the helicase that link ATP hydrolysis with mechanical work. DFT analysis further validated the MgF3(H2O)- species, indicating the significance of this TSA for studies of biological motors.
© 2021 The Authors. Published by American Chemical Society.

Entities:  

Year:  2021        PMID: 33717640      PMCID: PMC7944477          DOI: 10.1021/acscatal.0c04500

Source DB:  PubMed          Journal:  ACS Catal            Impact factor:   13.084


  30 in total

Review 1.  DExD/H box RNA helicases: from generic motors to specific dissociation functions.

Authors:  N K Tanner; P Linder
Journal:  Mol Cell       Date:  2001-08       Impact factor: 17.970

2.  Structure-based mutational analysis of the NS3 helicase from dengue virus.

Authors:  Aruna Sampath; Ting Xu; Alex Chao; Dahai Luo; Julien Lescar; Subhash G Vasudevan
Journal:  J Virol       Date:  2006-07       Impact factor: 5.103

3.  Targeting the NTPase site of Zika virus NS3 helicase for inhibitor discovery.

Authors:  Deepak Kumar; Murali Aarthy; Prateek Kumar; Sanjeev Kumar Singh; Vladimir N Uversky; Rajanish Giri
Journal:  J Biomol Struct Dyn       Date:  2019-11-14

Review 4.  Transition States, analogues, and drug development.

Authors:  Vern L Schramm
Journal:  ACS Chem Biol       Date:  2013-01-04       Impact factor: 5.100

5.  MgF(3)(-) as a transition state analog of phosphoryl transfer.

Authors:  Debbie L Graham; Peter N Lowe; Geoffrey W Grime; Michael Marsh; Katrin Rittinger; Stephen J Smerdon; Steven J Gamblin; John F Eccleston
Journal:  Chem Biol       Date:  2002-03

6.  Spring-loaded mechanism of DNA unwinding by hepatitis C virus NS3 helicase.

Authors:  Sua Myong; Michael M Bruno; Anna M Pyle; Taekjip Ha
Journal:  Science       Date:  2007-07-27       Impact factor: 47.728

7.  Assessing the Influence of Mutation on GTPase Transition States by Using X-ray Crystallography, 19 F NMR, and DFT Approaches.

Authors:  Yi Jin; Robert W Molt; Erika Pellegrini; Matthew J Cliff; Matthew W Bowler; Nigel G J Richards; G Michael Blackburn; Jonathan P Waltho
Journal:  Angew Chem Int Ed Engl       Date:  2017-05-24       Impact factor: 15.336

8.  Delicate structural coordination of the Severe Acute Respiratory Syndrome coronavirus Nsp13 upon ATP hydrolysis.

Authors:  Zhihui Jia; Liming Yan; Zhilin Ren; Lijie Wu; Jin Wang; Jing Guo; Litao Zheng; Zhenhua Ming; Lianqi Zhang; Zhiyong Lou; Zihe Rao
Journal:  Nucleic Acids Res       Date:  2019-07-09       Impact factor: 16.971

9.  A Trojan horse transition state analogue generated by MgF3- formation in an enzyme active site.

Authors:  Nicola J Baxter; Luis F Olguin; Marko Golicnik; Guoqiang Feng; Andrea M Hounslow; Wolfgang Bermel; G Michael Blackburn; Florian Hollfelder; Jonathan P Waltho; Nicholas H Williams
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-21       Impact factor: 11.205

10.  Molecular docking and simulation of Zika virus NS3 helicase.

Authors:  Syed Lal Badshah; Nasir Ahmad; Ashfaq Ur Rehman; Khalid Khan; Asad Ullah; Abdulrhman Alsayari; Abdullatif Bin Muhsinah; Yahia N Mabkhot
Journal:  BMC Chem       Date:  2019-05-17
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  2 in total

1.  Mechanism of Triphosphate Hydrolysis by Human MAT2A at 1.07 Å Resolution.

Authors:  Agnidipta Ghosh; Courtney N Niland; Sean M Cahill; Nishant M Karadkhelkar; Vern L Schramm
Journal:  J Am Chem Soc       Date:  2021-10-20       Impact factor: 16.383

2.  Structures of prokaryotic ubiquitin-like protein Pup in complex with depupylase Dop reveal the mechanism of catalytic phosphate formation.

Authors:  Hengjun Cui; Andreas U Müller; Marc Leibundgut; Jiawen Tian; Nenad Ban; Eilika Weber-Ban
Journal:  Nat Commun       Date:  2021-11-17       Impact factor: 14.919

  2 in total

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