Literature DB >> 23259601

Transition States, analogues, and drug development.

Vern L Schramm1.   

Abstract

Enzymes achieve their transition states by dynamic conformational searches on the femtosecond to picosecond time scale. Mimics of reactants at enzymatic transition states bind tightly to enzymes by stabilizing the conformation optimized through evolution for transition state formation. Instead of forming the transient transition state geometry, transition state analogues convert the short-lived transition state to a stable thermodynamic state. Enzymatic transition states are understood by combining kinetic isotope effects and computational chemistry. Analogues of the transition state can bind millions of times more tightly than substrates and show promise for drug development for several targets.

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Year:  2013        PMID: 23259601      PMCID: PMC3560411          DOI: 10.1021/cb300631k

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  85 in total

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Authors:  D Randal Kipp; Jennifer S Hirschi; Aya Wakata; Harris Goldstein; Vern L Schramm
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-09       Impact factor: 11.205

2.  Slow conformational motions that favor sub-picosecond motions important for catalysis.

Authors:  J R Exequiel T Pineda; Dimitri Antoniou; Steven D Schwartz
Journal:  J Phys Chem B       Date:  2010-11-15       Impact factor: 2.991

3.  Picomolar inhibitors as transition-state probes of 5'-methylthioadenosine nucleosidases.

Authors:  Jemy A Gutierrez; Minkui Luo; Vipender Singh; Lei Li; Rosemary L Brown; Gillian E Norris; Gary B Evans; Richard H Furneaux; Peter C Tyler; Gavin F Painter; Dirk H Lenz; Vern L Schramm
Journal:  ACS Chem Biol       Date:  2007-11-20       Impact factor: 5.100

4.  Chemical achievement and hope for the future.

Authors:  L PAULING
Journal:  Am Sci       Date:  1948-01       Impact factor: 0.548

5.  Transition state analogues in structures of ricin and saporin ribosome-inactivating proteins.

Authors:  Meng-Chiao Ho; Matthew B Sturm; Steven C Almo; Vern L Schramm
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-17       Impact factor: 11.205

6.  Transition state analogues for enzyme catalysis.

Authors:  R Wolfenden
Journal:  Nature       Date:  1969-08-16       Impact factor: 49.962

7.  Catalytic and allosteric mechanism of AMP nucleosidase from primary, beta-secondary, and multiple heavy atom kinetic isotope effects.

Authors:  D W Parkin; V L Schramm
Journal:  Biochemistry       Date:  1987-02-10       Impact factor: 3.162

8.  The Pseudomonas aeruginosa global regulator VqsR directly inhibits QscR to control quorum-sensing and virulence gene expression.

Authors:  Haihua Liang; Xin Deng; Quanjiang Ji; Fei Sun; Tuo Shen; Chuan He
Journal:  J Bacteriol       Date:  2012-04-13       Impact factor: 3.490

9.  Abnormal purine metabolism and purine overproduction in a patient deficient in purine nucleoside phosphorylase.

Authors:  A Cohen; D Doyle; D W Martin; A J Ammann
Journal:  N Engl J Med       Date:  1976-12-23       Impact factor: 91.245

10.  Targeting the polyamine pathway with transition-state analogue inhibitors of 5'-methylthioadenosine phosphorylase.

Authors:  Gary B Evans; Richard H Furneaux; Vern L Schramm; Vipender Singh; Peter C Tyler
Journal:  J Med Chem       Date:  2004-06-03       Impact factor: 7.446

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  41 in total

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2.  Potent inhibition of the C-P lyase nucleosidase PhnI by Immucillin-A triphosphate.

Authors:  Siddhesh S Kamat; Emmanuel S Burgos; Frank M Raushel
Journal:  Biochemistry       Date:  2013-10-11       Impact factor: 3.162

Review 3.  H3K36 methyltransferases as cancer drug targets: rationale and perspectives for inhibitor development.

Authors:  David S Rogawski; Jolanta Grembecka; Tomasz Cierpicki
Journal:  Future Med Chem       Date:  2016-08-22       Impact factor: 3.808

4.  Comparing the energy landscapes for native folding and aggregation of PrP.

Authors:  Derek R Dee; Michael T Woodside
Journal:  Prion       Date:  2016-05-03       Impact factor: 3.931

5.  Modulating Enzyme Catalysis through Mutations Designed to Alter Rapid Protein Dynamics.

Authors:  Ioanna Zoi; Javier Suarez; Dimitri Antoniou; Scott A Cameron; Vern L Schramm; Steven D Schwartz
Journal:  J Am Chem Soc       Date:  2016-03-08       Impact factor: 15.419

6.  Synthesis of bis-Phosphate Iminoaltritol Enantiomers and Structural Characterization with Adenine Phosphoribosyltransferase.

Authors:  Lawrence D Harris; Rajesh K Harijan; Rodrigo G Ducati; Gary B Evans; Brett M Hirsch; Vern L Schramm
Journal:  ACS Chem Biol       Date:  2017-12-14       Impact factor: 5.100

Review 7.  Mechanistic enzymology in drug discovery: a fresh perspective.

Authors:  Geoffrey A Holdgate; Thomas D Meek; Rachel L Grimley
Journal:  Nat Rev Drug Discov       Date:  2017-12-01       Impact factor: 84.694

8.  The role of a novel auxiliary pocket in bacterial phenylalanyl-tRNA synthetase druggability.

Authors:  Ayome Abibi; Andrew D Ferguson; Paul R Fleming; Ning Gao; Laurel I Hajec; Jun Hu; Valerie A Laganas; David C McKinney; Sarah M McLeod; D Bryan Prince; Adam B Shapiro; Ed T Buurman
Journal:  J Biol Chem       Date:  2014-06-16       Impact factor: 5.157

9.  Kinetic isotope effects reveal early transition state of protein lysine methyltransferase SET8.

Authors:  Joshua A Linscott; Kanishk Kapilashrami; Zhen Wang; Chamara Senevirathne; Ian R Bothwell; Gil Blum; Minkui Luo
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Review 10.  Recent Advances in the Discovery of Norovirus Therapeutics.

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Journal:  J Med Chem       Date:  2015-08-17       Impact factor: 7.446

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