Literature DB >> 16990434

A Trojan horse transition state analogue generated by MgF3- formation in an enzyme active site.

Nicola J Baxter1, Luis F Olguin, Marko Golicnik, Guoqiang Feng, Andrea M Hounslow, Wolfgang Bermel, G Michael Blackburn, Florian Hollfelder, Jonathan P Waltho, Nicholas H Williams.   

Abstract

Identifying how enzymes stabilize high-energy species along the reaction pathway is central to explaining their enormous rate acceleration. beta-Phosphoglucomutase catalyses the isomerization of beta-glucose-1-phosphate to beta-glucose-6-phosphate and appeared to be unique in its ability to stabilize a high-energy pentacoordinate phosphorane intermediate sufficiently to be directly observable in the enzyme active site. Using (19)F-NMR and kinetic analysis, we report that the complex that forms is not the postulated high-energy reaction intermediate, but a deceptively similar transition state analogue in which MgF(3)(-) mimics the transferring PO(3)(-) moiety. Here we present a detailed characterization of the metal ion-fluoride complex bound to the enzyme active site in solution, which reveals the molecular mechanism for fluoride inhibition of beta-phosphoglucomutase. This NMR methodology has a general application in identifying specific interactions between fluoride complexes and proteins and resolving structural assignments that are indistinguishable by x-ray crystallography.

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Year:  2006        PMID: 16990434      PMCID: PMC1595420          DOI: 10.1073/pnas.0604448103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

1.  pH influences fluoride coordination number of the AlFx phosphoryl transfer transition state analog.

Authors:  I Schlichting; J Reinstein
Journal:  Nat Struct Biol       Date:  1999-08

2.  Femtochemistry: Atomic-Scale Dynamics of the Chemical Bond Using Ultrafast Lasers (Nobel Lecture) Copyright((c)) The Nobel Foundation 2000. We thank the Nobel Foundation, Stockholm, for permission to print this lecture.

Authors: 
Journal:  Angew Chem Int Ed Engl       Date:  2000-08-04       Impact factor: 15.336

3.  Inhibition of the ATPase activity of Escherichia coli ATP synthase by magnesium fluoride.

Authors:  Zulfiqar Ahmad; Alan E Senior
Journal:  FEBS Lett       Date:  2005-12-28       Impact factor: 4.124

4.  Purification and enzymatic characterization of PgcM: a beta-phosphoglucomutase and glucose-1-phosphate phosphodismutase of Bacillus subtilis.

Authors:  L R Mesak; M K Dahl
Journal:  Arch Microbiol       Date:  2000-10       Impact factor: 2.552

5.  Analysis of the substrate specificity loop of the HAD superfamily cap domain.

Authors:  Sushmita D Lahiri; Guofeng Zhang; Jianying Dai; Debra Dunaway-Mariano; Karen N Allen
Journal:  Biochemistry       Date:  2004-03-16       Impact factor: 3.162

6.  Fluoride inhibition of yeast enolase: crystal structure of the enolase-Mg(2+)-F(-)-Pi complex at 2.6 A resolution.

Authors:  L Lebioda; E Zhang; K Lewinski; J M Brewer
Journal:  Proteins       Date:  1993-07

7.  The structure of bovine F1-ATPase inhibited by ADP and beryllium fluoride.

Authors:  Reiko Kagawa; Martin G Montgomery; Kerstin Braig; Andrew G W Leslie; John E Walker
Journal:  EMBO J       Date:  2004-07-01       Impact factor: 11.598

8.  Caught in the act: the structure of phosphorylated beta-phosphoglucomutase from Lactococcus lactis.

Authors:  Sushmita D Lahiri; Guofeng Zhang; Debra Dunaway-Mariano; Karen N Allen
Journal:  Biochemistry       Date:  2002-07-02       Impact factor: 3.162

9.  MgF(3)(-) as a transition state analog of phosphoryl transfer.

Authors:  Debbie L Graham; Peter N Lowe; Geoffrey W Grime; Michael Marsh; Katrin Rittinger; Stephen J Smerdon; Steven J Gamblin; John F Eccleston
Journal:  Chem Biol       Date:  2002-03

10.  Effects of domain dissection on the folding and stability of the 43 kDa protein PGK probed by NMR.

Authors:  Michelle A C Reed; Andrea M Hounslow; K H Sze; Igor G Barsukov; Laszlo L P Hosszu; Anthony R Clarke; C Jeremy Craven; Jonathan P Waltho
Journal:  J Mol Biol       Date:  2003-07-25       Impact factor: 5.469

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  23 in total

Review 1.  Biological phosphoryl-transfer reactions: understanding mechanism and catalysis.

Authors:  Jonathan K Lassila; Jesse G Zalatan; Daniel Herschlag
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

2.  A comparison of vanadate to a 2'-5' linkage at the active site of a small ribozyme suggests a role for water in transition-state stabilization.

Authors:  Andrew T Torelli; Jolanta Krucinska; Joseph E Wedekind
Journal:  RNA       Date:  2007-05-08       Impact factor: 4.942

3.  The catalytic scaffold of the haloalkanoic acid dehalogenase enzyme superfamily acts as a mold for the trigonal bipyramidal transition state.

Authors:  Zhibing Lu; Debra Dunaway-Mariano; Karen N Allen
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-08       Impact factor: 11.205

4.  Mechanistic evidence for a front-side, SNi-type reaction in a retaining glycosyltransferase.

Authors:  Seung Seo Lee; Sung You Hong; James C Errey; Atsushi Izumi; Gideon J Davies; Benjamin G Davis
Journal:  Nat Chem Biol       Date:  2011-08-07       Impact factor: 15.040

5.  Briefly bound to activate: transient binding of a second catalytic magnesium activates the structure and dynamics of CDK2 kinase for catalysis.

Authors:  Zhao Qin Bao; Douglas M Jacobsen; Matthew A Young
Journal:  Structure       Date:  2011-05-11       Impact factor: 5.006

6.  Near attack conformers dominate β-phosphoglucomutase complexes where geometry and charge distribution reflect those of substrate.

Authors:  Joanna L Griffin; Matthew W Bowler; Nicola J Baxter; Katherine N Leigh; Hugh R W Dannatt; Andrea M Hounslow; G Michael Blackburn; Charles Edwin Webster; Matthew J Cliff; Jonathan P Waltho
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-13       Impact factor: 11.205

7.  Insights into the reaction of protein-tyrosine phosphatase 1B: crystal structures for transition state analogs of both catalytic steps.

Authors:  Tiago A S Brandão; Alvan C Hengge; Sean J Johnson
Journal:  J Biol Chem       Date:  2010-03-16       Impact factor: 5.157

8.  Structure-function analysis of the 3' phosphatase component of T4 polynucleotide kinase/phosphatase.

Authors:  Hui Zhu; Paul Smith; Li Kai Wang; Stewart Shuman
Journal:  Virology       Date:  2007-05-09       Impact factor: 3.616

Review 9.  Why nature really chose phosphate.

Authors:  Shina C L Kamerlin; Pankaz K Sharma; Ram B Prasad; Arieh Warshel
Journal:  Q Rev Biophys       Date:  2013-01-15       Impact factor: 5.318

10.  α-Fluorophosphonates reveal how a phosphomutase conserves transition state conformation over hexose recognition in its two-step reaction.

Authors:  Yi Jin; Debabrata Bhattasali; Erika Pellegrini; Stephanie M Forget; Nicola J Baxter; Matthew J Cliff; Matthew W Bowler; David L Jakeman; G Michael Blackburn; Jonathan P Waltho
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-07       Impact factor: 11.205

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