Literature DB >> 33686070

Time-resolved single-cell analysis of Brca1 associated mammary tumourigenesis reveals aberrant differentiation of luminal progenitors.

Karsten Bach1,2,3, Sara Pensa1,3, Marija Zarocsinceva3,4, Katarzyna Kania2, Julie Stockis2, Silvain Pinaud2, Kyren A Lazarus1,3, Mona Shehata5, Bruno M Simões6, Alice R Greenhalgh6, Sacha J Howell6,7, Robert B Clarke6, Carlos Caldas2,3, Timotheus Y F Halim2, John C Marioni8,9,10, Walid T Khaled11,12,13.   

Abstract

It is unclear how genetic aberrations impact the state of nascent tumour cells and their microenvironment. BRCA1 driven triple negative breast cancer (TNBC) has been shown to arise from luminal progenitors yet little is known about how BRCA1 loss-of-function (LOF) and concomitant mutations affect the luminal progenitor cell state. Here we demonstrate how time-resolved single-cell profiling of genetically engineered mouse models before tumour formation can address this challenge. We found that perturbing Brca1/p53 in luminal progenitors induces aberrant alveolar differentiation pre-malignancy accompanied by pro-tumourigenic changes in the immune compartment. Unlike alveolar differentiation during gestation, this process is cell autonomous and characterised by the dysregulation of transcription factors driving alveologenesis. Based on our data we propose a model where Brca1/p53 LOF inadvertently promotes a differentiation program hardwired in luminal progenitors, highlighting the deterministic role of the cell-of-origin and offering a potential explanation for the tissue specificity of BRCA1 tumours.

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Year:  2021        PMID: 33686070      PMCID: PMC7940427          DOI: 10.1038/s41467-021-21783-3

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  34 in total

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Authors:  Lothar Hennighausen; Gertraud W Robinson
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2.  RANK ligand as a potential target for breast cancer prevention in BRCA1-mutation carriers.

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Journal:  Nat Med       Date:  2016-06-20       Impact factor: 53.440

3.  csaw: a Bioconductor package for differential binding analysis of ChIP-seq data using sliding windows.

Authors:  Aaron T L Lun; Gordon K Smyth
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Review 4.  Control of RANKL gene expression.

Authors:  Charles A O'Brien
Journal:  Bone       Date:  2009-08-27       Impact factor: 4.398

5.  Aberrant luminal progenitors as the candidate target population for basal tumor development in BRCA1 mutation carriers.

Authors:  Elgene Lim; François Vaillant; Di Wu; Natasha C Forrest; Bhupinder Pal; Adam H Hart; Marie-Liesse Asselin-Labat; David E Gyorki; Teresa Ward; Audrey Partanen; Frank Feleppa; Lily I Huschtscha; Heather J Thorne; Stephen B Fox; Max Yan; Juliet D French; Melissa A Brown; Gordon K Smyth; Jane E Visvader; Geoffrey J Lindeman
Journal:  Nat Med       Date:  2009-08-02       Impact factor: 53.440

6.  Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors.

Authors:  Laleh Haghverdi; Aaron T L Lun; Michael D Morgan; John C Marioni
Journal:  Nat Biotechnol       Date:  2018-04-02       Impact factor: 54.908

7.  A single-cell molecular map of mouse gastrulation and early organogenesis.

Authors:  Blanca Pijuan-Sala; Jonathan A Griffiths; Carolina Guibentif; Tom W Hiscock; Wajid Jawaid; Fernando J Calero-Nieto; Carla Mulas; Ximena Ibarra-Soria; Richard C V Tyser; Debbie Lee Lian Ho; Wolf Reik; Shankar Srinivas; Benjamin D Simons; Jennifer Nichols; John C Marioni; Berthold Göttgens
Journal:  Nature       Date:  2019-02-20       Impact factor: 69.504

8.  Fetal-derived macrophages dominate in adult mammary glands.

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Journal:  Nat Commun       Date:  2019-01-17       Impact factor: 14.919

9.  Pooling across cells to normalize single-cell RNA sequencing data with many zero counts.

Authors:  Aaron T L Lun; Karsten Bach; John C Marioni
Journal:  Genome Biol       Date:  2016-04-27       Impact factor: 13.583

10.  COMUNET: a tool to explore and visualize intercellular communication.

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Journal:  Bioinformatics       Date:  2020-08-01       Impact factor: 6.937

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Journal:  Biol Cybern       Date:  2022-06-09       Impact factor: 3.072

3.  A human breast atlas integrating single-cell proteomics and transcriptomics.

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4.  Transcriptional changes in the mammary gland during lactation revealed by single cell sequencing of cells from human milk.

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Review 5.  Mammary gland development from a single cell 'omics view.

Authors:  Alecia-Jane Twigger; Walid T Khaled
Journal:  Semin Cell Dev Biol       Date:  2021-03-31       Impact factor: 7.727

6.  Modification of BRCA1-associated breast cancer risk by HMMR overexpression.

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8.  Parity-induced changes to mammary epithelial cells control NKT cell expansion and mammary oncogenesis.

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Review 9.  The Role of Progesterone Receptors in Breast Cancer.

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Journal:  Drug Des Devel Ther       Date:  2022-01-26       Impact factor: 4.162

Review 10.  G-Quadruplex Matters in Tissue-Specific Tumorigenesis by BRCA1 Deficiency.

Authors:  Sanghyun Kim; Sohyun Hwang
Journal:  Genes (Basel)       Date:  2022-02-22       Impact factor: 4.096

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