Literature DB >> 33659458

Colorimetric RT-LAMP Methods to Detect Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2).

Gun-Soo Park1,2, Seung-Hwa Baek1,3, Keunbon Ku1, Seong-Jun Kim1, Seung Il Kim1,4, Bum-Tae Kim1, Jin-Soo Maeng1,2.   

Abstract

Standard diagnostic methods of Coronavirus Disease 2019 (COVID-19) rely on RT-qPCR technique which have limited point-of-care test (POCT) potential due to necessity of dedicated equipment and specialized personnel. LAMP, an isothermal nucleic acid amplification test (NAAT), is a promising technique that may substitute RT-qPCR for POCT of genomic materials. Here, we provide a protocol to perform reverse transcription LAMP targeting SARS-CoV-2. We adopted both real-time fluorescence detection and end-point colorimetric detection approaches. Our protocol would be useful for screening diagnosis of COVID-19 and be a baseline for development of improved POCT NAAT.
Copyright © 2020 The Authors; exclusive licensee Bio-protocol LLC.

Entities:  

Keywords:  COVID-19; Colorimetric detection; LAMP; RT-LAMP; SARS-CoV-2

Year:  2020        PMID: 33659458      PMCID: PMC7842283          DOI: 10.21769/BioProtoc.3804

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  10 in total

1.  Loop-mediated isothermal amplification of DNA.

Authors:  T Notomi; H Okayama; H Masubuchi; T Yonekawa; K Watanabe; N Amino; T Hase
Journal:  Nucleic Acids Res       Date:  2000-06-15       Impact factor: 16.971

2.  Visual detection of isothermal nucleic acid amplification using pH-sensitive dyes.

Authors:  Nathan A Tanner; Yinhua Zhang; Thomas C Evans
Journal:  Biotechniques       Date:  2015-02-01       Impact factor: 1.993

3.  Comparison of fluorescent intercalating dyes for quantitative loop-mediated isothermal amplification (qLAMP).

Authors:  Igor P Oscorbin; Ekaterina A Belousova; Aleksandr I Zakabunin; Ulyana A Boyarskikh; Maksim L Filipenko
Journal:  Biotechniques       Date:  2016-07-01       Impact factor: 1.993

4.  Rapid and Extraction-Free Detection of SARS-CoV-2 from Saliva by Colorimetric Reverse-Transcription Loop-Mediated Isothermal Amplification.

Authors:  Matthew A Lalli; Joshua S Langmade; Xuhua Chen; Catrina C Fronick; Christopher S Sawyer; Lauren C Burcea; Michael N Wilkinson; Robert S Fulton; Michael Heinz; William J Buchser; Richard D Head; Robi D Mitra; Jeffrey Milbrandt
Journal:  Clin Chem       Date:  2021-01-30       Impact factor: 8.327

Review 5.  Point-of-care nucleic acid testing for infectious diseases.

Authors:  Angelika Niemz; Tanya M Ferguson; David S Boyle
Journal:  Trends Biotechnol       Date:  2011-03-04       Impact factor: 19.536

6.  Method for colorimetric detection of double-stranded nucleic acid using leuco triphenylmethane dyes.

Authors:  Shigehiko Miyamoto; Sotaro Sano; Koji Takahashi; Takaaki Jikihara
Journal:  Anal Biochem       Date:  2015-01-07       Impact factor: 3.365

7.  Colorimetric detection of loop-mediated isothermal amplification reaction by using hydroxy naphthol blue.

Authors:  Motoki Goto; Eiichi Honda; Atsuo Ogura; Akio Nomoto; Ken-Ichi Hanaki
Journal:  Biotechniques       Date:  2009-03       Impact factor: 1.993

8.  Rapid and visual detection of 2019 novel coronavirus (SARS-CoV-2) by a reverse transcription loop-mediated isothermal amplification assay.

Authors:  C Yan; J Cui; L Huang; B Du; L Chen; G Xue; S Li; W Zhang; L Zhao; Y Sun; H Yao; N Li; H Zhao; Y Feng; S Liu; Q Zhang; D Liu; J Yuan
Journal:  Clin Microbiol Infect       Date:  2020-04-08       Impact factor: 8.067

9.  Development of Reverse Transcription Loop-Mediated Isothermal Amplification Assays Targeting Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2).

Authors:  Gun-Soo Park; Keunbon Ku; Seung-Hwa Baek; Seong-Jun Kim; Seung Il Kim; Bum-Tae Kim; Jin-Soo Maeng
Journal:  J Mol Diagn       Date:  2020-04-07       Impact factor: 5.568

10.  Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR.

Authors:  Victor M Corman; Olfert Landt; Marco Kaiser; Richard Molenkamp; Adam Meijer; Daniel Kw Chu; Tobias Bleicker; Sebastian Brünink; Julia Schneider; Marie Luisa Schmidt; Daphne Gjc Mulders; Bart L Haagmans; Bas van der Veer; Sharon van den Brink; Lisa Wijsman; Gabriel Goderski; Jean-Louis Romette; Joanna Ellis; Maria Zambon; Malik Peiris; Herman Goossens; Chantal Reusken; Marion Pg Koopmans; Christian Drosten
Journal:  Euro Surveill       Date:  2020-01
  10 in total
  1 in total

Review 1.  Recent advances in loop-mediated isothermal amplification (LAMP) for rapid and efficient detection of pathogens.

Authors:  Nupur Garg; Farhan Jalees Ahmad; Sudeshna Kar
Journal:  Curr Res Microb Sci       Date:  2022-02-23
  1 in total

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