Literature DB >> 33654146

COVID-19 salivary Raman fingerprint: innovative approach for the detection of current and past SARS-CoV-2 infections.

C Carlomagno1, D Bertazioli2, A Gualerzi3, S Picciolini3, P I Banfi3, A Lax3, E Messina2, J Navarro3, L Bianchi3, A Caronni3, F Marenco3, S Monteleone3, C Arienti3, M Bedoni4.   

Abstract

The pandemic of COVID-19 is continuously spreading, becoming a worldwide emergency. Early and fast identification of subjects with a current or past infection must be achieved to slow down the epidemiological widening. Here we report a Raman-based approach for the analysis of saliva, able to significantly discriminate the signal of patients with a current infection by COVID-19 from healthy subjects and/or subjects with a past infection. Our results demonstrated the differences in saliva biochemical composition of the three experimental groups, with modifications grouped in specific attributable spectral regions. The Raman-based classification model was able to discriminate the signal collected from COVID-19 patients with accuracy, precision, sensitivity and specificity of more than 95%. In order to translate this discrimination from the signal-level to the patient-level, we developed a Deep Learning model obtaining accuracy in the range 89-92%. These findings have implications for the creation of a potential Raman-based diagnostic tool, using saliva as minimal invasive and highly informative biofluid, demonstrating the efficacy of the classification model.

Entities:  

Year:  2021        PMID: 33654146     DOI: 10.1038/s41598-021-84565-3

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  5 in total

Review 1.  TGF-β signaling and microRNA cross-talk regulates abdominal aortic aneurysm progression.

Authors:  Ying Tang; Wenjing Fan; Bu Zou; Wei Yan; Yangfeng Hou; Oware Kwabena Agyare; Zhisheng Jiang; Shunlin Qu
Journal:  Clin Chim Acta       Date:  2020-12-31       Impact factor: 3.786

2.  Thoracic imaging tests for the diagnosis of COVID-19.

Authors:  Nayaar Islam; Jean-Paul Salameh; Mariska Mg Leeflang; Lotty Hooft; Trevor A McGrath; Christian B van der Pol; Robert A Frank; Sakib Kazi; Ross Prager; Samanjit S Hare; Carole Dennie; René Spijker; Jonathan J Deeks; Jacqueline Dinnes; Kevin Jenniskens; Daniël A Korevaar; Jérémie F Cohen; Ann Van den Bruel; Yemisi Takwoingi; Janneke van de Wijgert; Junfeng Wang; Matthew Df McInnes
Journal:  Cochrane Database Syst Rev       Date:  2020-11-26

3.  WHO Declares COVID-19 a Pandemic.

Authors:  Domenico Cucinotta; Maurizio Vanelli
Journal:  Acta Biomed       Date:  2020-03-19

4.  Coinfection by Severe Acute Respiratory Syndrome Coronavirus 2 and Influenza A(H1N1)pdm09 Virus Enhances the Severity of Pneumonia in Golden Syrian Hamsters.

Authors:  Anna Jinxia Zhang; Andrew Chak-Yiu Lee; Jasper Fuk-Woo Chan; Feifei Liu; Can Li; Yanxia Chen; Hin Chu; Siu-Ying Lau; Pui Wang; Chris Chung-Sing Chan; Vincent Kwok-Man Poon; Shuofeng Yuan; Kelvin Kai-Wang To; Honglin Chen; Kwok-Yung Yuen
Journal:  Clin Infect Dis       Date:  2021-06-15       Impact factor: 9.079

5.  NLRP3 regulates alveolar bone loss in ligature-induced periodontitis by promoting osteoclastic differentiation.

Authors:  Yuyi Chen; Qiudong Yang; Chunhua Lv; Yue Chen; Wenhua Zhao; Wenlei Li; Hongyu Chen; Hua Wang; Wen Sun; Hua Yuan
Journal:  Cell Prolif       Date:  2020-12-31       Impact factor: 6.831

  5 in total
  20 in total

1.  Diagnosing COVID-19 in human sera with detected immunoglobulins IgM and IgG by means of Raman spectroscopy.

Authors:  Ana Cristina Castro Goulart; Renato Amaro Zângaro; Henrique Cunha Carvalho; Landulfo Silveira
Journal:  J Raman Spectrosc       Date:  2021-08-19       Impact factor: 2.727

2.  Rapid detection of SARS-CoV-2 using a radiolabeled antibody.

Authors:  Giacomo Pirovano; Alvaro A Ordonez; Sanjay K Jain; Thomas Reiner; Laurence S Carroll; Naga Vara Kishore Pillarsetty
Journal:  Nucl Med Biol       Date:  2021-05-25       Impact factor: 2.947

Review 3.  Raman spectroscopy: current applications in breast cancer diagnosis, challenges and future prospects.

Authors:  Katie Hanna; Emma Krzoska; Abeer M Shaaban; David Muirhead; Rasha Abu-Eid; Valerie Speirs
Journal:  Br J Cancer       Date:  2021-12-10       Impact factor: 9.075

Review 4.  Spectroscopy: a versatile sensing tool for cost-effective and rapid detection of novel coronavirus (COVID-19).

Authors:  Ujjal Kumar Sur; Chittaranjan Santra
Journal:  Emergent Mater       Date:  2022-02-28

5.  Saliva-based detection of COVID-19 infection in a real-world setting using reagent-free Raman spectroscopy and machine learning.

Authors:  Katherine Ember; François Daoust; Myriam Mahfoud; Frédérick Dallaire; Esmat Zamani Ahmad; Trang Tran; Arthur Plante; Mame-Kany Diop; Tien Nguyen; Amélie St-Georges-Robillard; Nassim Ksantini; Julie Lanthier; Antoine Filiatrault; Guillaume Sheehy; Gabriel Beaudoin; Caroline Quach; Dominique Trudel; Frédéric Leblond
Journal:  J Biomed Opt       Date:  2022-02       Impact factor: 3.758

Review 6.  Insight into prognostics, diagnostics, and management strategies for SARS CoV-2.

Authors:  Umay Amara; Sidra Rashid; Khalid Mahmood; Mian Hasnain Nawaz; Akhtar Hayat; Maria Hassan
Journal:  RSC Adv       Date:  2022-03-11       Impact factor: 3.361

7.  Probing the mutation independent interaction of DNA probes with SARS-CoV-2 variants through a combination of surface-enhanced Raman scattering and machine learning.

Authors:  Parikshit Moitra; Ardalan Chaichi; Syed Mohammad Abid Hasan; Ketan Dighe; Maha Alafeef; Alisha Prasad; Manas Ranjan Gartia; Dipanjan Pan
Journal:  Biosens Bioelectron       Date:  2022-03-22       Impact factor: 12.545

8.  Harnessing recombinase polymerase amplification for rapid multi-gene detection of SARS-CoV-2 in resource-limited settings.

Authors:  Dounia Cherkaoui; Da Huang; Benjamin S Miller; Valérian Turbé; Rachel A McKendry
Journal:  Biosens Bioelectron       Date:  2021-05-14       Impact factor: 10.618

Review 9.  Applications of Raman Spectroscopy in Bacterial Infections: Principles, Advantages, and Shortcomings.

Authors:  Liang Wang; Wei Liu; Jia-Wei Tang; Jun-Jiao Wang; Qing-Hua Liu; Peng-Bo Wen; Meng-Meng Wang; Ya-Cheng Pan; Bing Gu; Xiao Zhang
Journal:  Front Microbiol       Date:  2021-07-19       Impact factor: 5.640

10.  Synergistic surface-enhanced Raman scattering effect to distinguish live SARS-CoV-2 S pseudovirus.

Authors:  Jaya Sitjar; Hong-Zheng Xu; Chih-Yun Liu; Jen-Ren Wang; Jiunn-Der Liao; Huey-Pin Tsai; Han Lee; Bernard Haochih Liu; Chia-Wei Chang
Journal:  Anal Chim Acta       Date:  2021-12-27       Impact factor: 6.911

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