Literature DB >> 33653632

Single-Cell Proteomics.

Luke F Vistain1, Savaş Tay2.   

Abstract

The inability to make broad, minimally biased measurements of a cell's proteome stands as a major bottleneck for understanding how gene expression translates into cellular phenotype. Unlike sequencing for nucleic acids, there is no dominant method for making single-cell proteomic measurements. Instead, methods typically focus on either absolute quantification of a small number of proteins or highly multiplexed protein measurements. Advances in microfluidics and output encoding have led to major improvements in both aspects. Here, we review the most recent progress that has enabled hundreds of protein measurements and ultrahigh-sensitivity quantification. We also highlight emerging technologies such as single-cell mass spectrometry that may enable unbiased measurement of cellular proteomes.
Copyright © 2021. Published by Elsevier Ltd.

Keywords:  multiomic; multiplexing; proteome; targeted proteomics; untargeted proteomics

Year:  2021        PMID: 33653632     DOI: 10.1016/j.tibs.2021.01.013

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  12 in total

Review 1.  Single-cell sequencing: A cutting edge tool in molecular medical research.

Authors:  Pratibha Misra; Amruta R Jadhav; Sharmila A Bapat
Journal:  Med J Armed Forces India       Date:  2022-08-26

2.  Microscopy-based single-cell proteomic profiling reveals heterogeneity in DNA damage response dynamics.

Authors:  Pin-Rui Su; Li You; Cecile Beerens; Karel Bezstarosti; Jeroen Demmers; Martin Pabst; Roland Kanaar; Cheng-Chih Hsu; Miao-Ping Chien
Journal:  Cell Rep Methods       Date:  2022-06-13

3.  Single-Cell RNA-Seq Analysis of Olfactory Mucosal Cells of Alzheimer's Disease Patients.

Authors:  Riikka Lampinen; Mohammad Feroze Fazaludeen; Simone Avesani; Tiit Örd; Elina Penttilä; Juha-Matti Lehtola; Toni Saari; Sanna Hannonen; Liudmila Saveleva; Emma Kaartinen; Francisco Fernández Acosta; Marcela Cruz-Haces; Heikki Löppönen; Alan Mackay-Sim; Minna U Kaikkonen; Anne M Koivisto; Tarja Malm; Anthony R White; Rosalba Giugno; Sweelin Chew; Katja M Kanninen
Journal:  Cells       Date:  2022-02-15       Impact factor: 6.600

Review 4.  Decoding Lung Cancer at Single-Cell Level.

Authors:  Xing-Xing Fan; Qiang Wu
Journal:  Front Immunol       Date:  2022-05-23       Impact factor: 8.786

5.  Counting protein molecules for single-cell proteomics.

Authors:  Nikolai Slavov
Journal:  Cell       Date:  2022-01-20       Impact factor: 41.582

6.  Dual-isoform hUBE3A gene transfer improves behavioral and seizure outcomes in Angelman syndrome model mice.

Authors:  Matthew C Judson; Charles Shyng; Jeremy M Simon; Courtney R Davis; A Mattijs Punt; Mirabel T Salmon; Noah W Miller; Kimberly D Ritola; Ype Elgersma; David G Amaral; Steven J Gray; Benjamin D Philpot
Journal:  JCI Insight       Date:  2021-10-22

7.  Toward Zero Variance in Proteomics Sample Preparation: Positive-Pressure FASP in 96-Well Format (PF96) Enables Highly Reproducible, Time- and Cost-Efficient Analysis of Sample Cohorts.

Authors:  Stefan Loroch; Dominik Kopczynski; Adriana C Schneider; Cornelia Schumbrutzki; Ingo Feldmann; Eleftherios Panagiotidis; Yvonne Reinders; Roman Sakson; Fiorella A Solari; Alicia Vening; Frauke Swieringa; Johan W M Heemskerk; Maria Grandoch; Thomas Dandekar; Albert Sickmann
Journal:  J Proteome Res       Date:  2022-03-22       Impact factor: 4.466

Review 8.  Mapping Breast Cancer Microenvironment Through Single-Cell Omics.

Authors:  Zhenya Tan; Chen Kan; Minqiong Sun; Fan Yang; Mandy Wong; Siying Wang; Hong Zheng
Journal:  Front Immunol       Date:  2022-04-20       Impact factor: 8.786

Review 9.  A roadmap for translational cancer glycoimmunology at single cell resolution.

Authors:  Andreia Peixoto; Andreia Miranda; Lúcio Lara Santos; José Alexandre Ferreira
Journal:  J Exp Clin Cancer Res       Date:  2022-04-15

Review 10.  The landscape of aging.

Authors:  Yusheng Cai; Wei Song; Jiaming Li; Ying Jing; Chuqian Liang; Liyuan Zhang; Xia Zhang; Wenhui Zhang; Beibei Liu; Yongpan An; Jingyi Li; Baixue Tang; Siyu Pei; Xueying Wu; Yuxuan Liu; Cheng-Le Zhuang; Yilin Ying; Xuefeng Dou; Yu Chen; Fu-Hui Xiao; Dingfeng Li; Ruici Yang; Ya Zhao; Yang Wang; Lihui Wang; Yujing Li; Shuai Ma; Si Wang; Xiaoyuan Song; Jie Ren; Liang Zhang; Jun Wang; Weiqi Zhang; Zhengwei Xie; Jing Qu; Jianwei Wang; Yichuan Xiao; Ye Tian; Gelin Wang; Ping Hu; Jing Ye; Yu Sun; Zhiyong Mao; Qing-Peng Kong; Qiang Liu; Weiguo Zou; Xiao-Li Tian; Zhi-Xiong Xiao; Yong Liu; Jun-Ping Liu; Moshi Song; Jing-Dong J Han; Guang-Hui Liu
Journal:  Sci China Life Sci       Date:  2022-09-02       Impact factor: 10.372

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