Literature DB >> 33651232

Fungal diversity present on rocks from a polar desert in continental Antarctica assessed using DNA metabarcoding.

Graciéle Cunha Alves de Menezes1, Paulo E A S Câmara2, Otávio Henrique Bezerra Pinto3, Micheline Carvalho-Silva2, Fábio Soares Oliveira4, Caroline Delpupo Souza5, Carlos Ernesto G Reynaud Schaefer6, Peter Convey7, Carlos Augusto Rosa1, Luiz Henrique Rosa8.   

Abstract

We evaluated the fungal diversity associated with carbonate veins and two types of salt encrustation in rocks in a polar desert region of continental Antarctica using DNA a metabarcoding approach. We detected 262,268 reads grouped into 517 amplicon sequence variants (ASVs) assigned to the phyla Ascomycota, Basidiomycota, Mortierellomycota and Mucoromycota. Fourteen ASVs belonging to the genera Trichosporon, Mortierella, Penicillium, Aspergillus, Cladosporium, Coprinellus, Pleurotus and Pseudogymnoascus were assessed to be dominant taxa. The fungal communities of the three habitats sampled displayed high diversity indices when compared with other habitats of Antarctica, although differing in detail, with the highest diversity indices in the gypsum crust type 2. Only 48 of the 517 ASVs (9.28%) were detected in all three habitats, including dominant, intermediate and minor components. In contrast with previous studies of fungal communities living in the ultra-extreme conditions of continental Antarctica, application of metabarcoding revealed the DNA of a rich and complex resident fungal community. The ASVs detected included fungi with different ecological roles, with xerophilic, human- and animal-associated, phytopathogenic, saprotrophic, mutualistic, psychrotolerant and cosmopolitan taxa. This sequence diversity may be the result of deposition of fungal propagules over time driven by air currents, precipitation or human activities in the region.

Entities:  

Keywords:  Antarctica; Ecology; Environmental DNA; ITS rDNA; Rock inhabiting fungi; Taxonomy

Mesh:

Substances:

Year:  2021        PMID: 33651232     DOI: 10.1007/s00792-021-01221-4

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  33 in total

1.  Origins of sulphate in Antarctic dry-valley soils as deduced from anomalous 17O compositions.

Authors:  H Bao; D A Campbell; J G Bockheim; M H Thiemens
Journal:  Nature       Date:  2000-09-28       Impact factor: 49.962

Review 2.  Hypolithic microbial communities: between a rock and a hard place.

Authors:  Yuki Chan; Donnabella C Lacap; Maggie C Y Lau; Kong Ying Ha; Kimberley A Warren-Rhodes; Charles S Cockell; Donald A Cowan; Christopher P McKay; Stephen B Pointing
Journal:  Environ Microbiol       Date:  2012-07-11       Impact factor: 5.491

3.  Solutes determine the temperature windows for microbial survival and growth.

Authors:  Jason P Chin; Julianne Megaw; Caroline L Magill; Krzysztof Nowotarski; Jim P Williams; Prashanth Bhaganna; Mark Linton; Margaret F Patterson; Graham J C Underwood; Allen Y Mswaka; John E Hallsworth
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-19       Impact factor: 11.205

4.  The diversity, distribution, and pathogenic potential of cultivable fungi present in rocks from the South Shetlands archipelago, Maritime Antarctica.

Authors:  Isabel M S Alves; Vívian N Gonçalves; Fabio S Oliveira; Carlos E G R Schaefer; Carlos A Rosa; Luiz H Rosa
Journal:  Extremophiles       Date:  2019-03-09       Impact factor: 2.395

5.  Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Authors:  Evan Bolyen; Jai Ram Rideout; Matthew R Dillon; Nicholas A Bokulich; Christian C Abnet; Gabriel A Al-Ghalith; Harriet Alexander; Eric J Alm; Manimozhiyan Arumugam; Francesco Asnicar; Yang Bai; Jordan E Bisanz; Kyle Bittinger; Asker Brejnrod; Colin J Brislawn; C Titus Brown; Benjamin J Callahan; Andrés Mauricio Caraballo-Rodríguez; John Chase; Emily K Cope; Ricardo Da Silva; Christian Diener; Pieter C Dorrestein; Gavin M Douglas; Daniel M Durall; Claire Duvallet; Christian F Edwardson; Madeleine Ernst; Mehrbod Estaki; Jennifer Fouquier; Julia M Gauglitz; Sean M Gibbons; Deanna L Gibson; Antonio Gonzalez; Kestrel Gorlick; Jiarong Guo; Benjamin Hillmann; Susan Holmes; Hannes Holste; Curtis Huttenhower; Gavin A Huttley; Stefan Janssen; Alan K Jarmusch; Lingjing Jiang; Benjamin D Kaehler; Kyo Bin Kang; Christopher R Keefe; Paul Keim; Scott T Kelley; Dan Knights; Irina Koester; Tomasz Kosciolek; Jorden Kreps; Morgan G I Langille; Joslynn Lee; Ruth Ley; Yong-Xin Liu; Erikka Loftfield; Catherine Lozupone; Massoud Maher; Clarisse Marotz; Bryan D Martin; Daniel McDonald; Lauren J McIver; Alexey V Melnik; Jessica L Metcalf; Sydney C Morgan; Jamie T Morton; Ahmad Turan Naimey; Jose A Navas-Molina; Louis Felix Nothias; Stephanie B Orchanian; Talima Pearson; Samuel L Peoples; Daniel Petras; Mary Lai Preuss; Elmar Pruesse; Lasse Buur Rasmussen; Adam Rivers; Michael S Robeson; Patrick Rosenthal; Nicola Segata; Michael Shaffer; Arron Shiffer; Rashmi Sinha; Se Jin Song; John R Spear; Austin D Swafford; Luke R Thompson; Pedro J Torres; Pauline Trinh; Anupriya Tripathi; Peter J Turnbaugh; Sabah Ul-Hasan; Justin J J van der Hooft; Fernando Vargas; Yoshiki Vázquez-Baeza; Emily Vogtmann; Max von Hippel; William Walters; Yunhu Wan; Mingxun Wang; Jonathan Warren; Kyle C Weber; Charles H D Williamson; Amy D Willis; Zhenjiang Zech Xu; Jesse R Zaneveld; Yilong Zhang; Qiyun Zhu; Rob Knight; J Gregory Caporaso
Journal:  Nat Biotechnol       Date:  2019-08       Impact factor: 54.908

6.  DADA2: High-resolution sample inference from Illumina amplicon data.

Authors:  Benjamin J Callahan; Paul J McMurdie; Michael J Rosen; Andrew W Han; Amy Jo A Johnson; Susan P Holmes
Journal:  Nat Methods       Date:  2016-05-23       Impact factor: 28.547

7.  Aspergillus alabamensis, a new clinically relevant species in the section Terrei.

Authors:  S Arunmozhi Balajee; John W Baddley; Stephen W Peterson; David Nickle; János Varga; Angeline Boey; Cornelia Lass-Flörl; Jens C Frisvad; Robert A Samson
Journal:  Eukaryot Cell       Date:  2009-03-20

8.  Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species.

Authors:  Shilin Chen; Hui Yao; Jianping Han; Chang Liu; Jingyuan Song; Linchun Shi; Yingjie Zhu; Xinye Ma; Ting Gao; Xiaohui Pang; Kun Luo; Ying Li; Xiwen Li; Xiaocheng Jia; Yulin Lin; Christine Leon
Journal:  PLoS One       Date:  2010-01-07       Impact factor: 3.240

9.  Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin.

Authors:  Nicholas A Bokulich; Benjamin D Kaehler; Jai Ram Rideout; Matthew Dillon; Evan Bolyen; Rob Knight; Gavin A Huttley; J Gregory Caporaso
Journal:  Microbiome       Date:  2018-05-17       Impact factor: 14.650

10.  Effects of Spatial Variability and Relic DNA Removal on the Detection of Temporal Dynamics in Soil Microbial Communities.

Authors:  Paul Carini; Manuel Delgado-Baquerizo; Eve-Lyn S Hinckley; Hannah Holland-Moritz; Tess E Brewer; Garrett Rue; Caihong Vanderburgh; Diane McKnight; Noah Fierer
Journal:  mBio       Date:  2020-01-21       Impact factor: 7.867

View more
  4 in total

1.  Diversity of fungal DNA in lake sediments on Vega Island, north-east Antarctic Peninsula assessed using DNA metabarcoding.

Authors:  Mayara Baptistucci Ogaki; Paulo Eduardo Aguiar Saraiva Câmara; Otávio Henrique Bezerra Pinto; Juan Manuel Lirio; Silvia H Coria; Rosemary Vieira; Micheline Carvalho-Silva; Peter Convey; Carlos Augusto Rosa; Luiz Henrique Rosa
Journal:  Extremophiles       Date:  2021-04-10       Impact factor: 2.395

2.  Fungal diversity in a sediment core from climate change impacted Boeckella Lake, Hope Bay, north-eastern Antarctic Peninsula assessed using metabarcoding.

Authors:  Luiz Henrique Rosa; Mayara Baptistucci Ogaki; Juan Manuel Lirio; Rosemary Vieira; Silvia H Coria; Otávio Henrique Bezerra Pinto; Micheline Carvalho-Silva; Peter Convey; Carlos Augusto Rosa; Paulo Eduardo Aguiar Saraiva Câmara
Journal:  Extremophiles       Date:  2022-05-02       Impact factor: 2.395

3.  Diversity, distribution and ecology of fungal communities present in Antarctic lake sediments uncovered by DNA metabarcoding.

Authors:  Láuren Machado Drumond de Souza; Juan Manuel Lirio; Silvia Herminda Coria; Fabyano Alvares Cardoso Lopes; Peter Convey; Micheline Carvalho-Silva; Fábio Soares de Oliveira; Carlos Augusto Rosa; Paulo Eduardo Aguiar Saraiva Câmara; Luiz Henrique Rosa
Journal:  Sci Rep       Date:  2022-05-19       Impact factor: 4.996

4.  Fungi in the Antarctic Cryosphere: Using DNA Metabarcoding to Reveal Fungal Diversity in Glacial Ice from the Antarctic Peninsula Region.

Authors:  Graciéle Cunha Alves de Menezes; Paulo E A S Câmara; Otávio Henrique Bezerra Pinto; Peter Convey; Micheline Carvalho-Silva; Jefferson Cardia Simões; Carlos Augusto Rosa; Luiz Henrique Rosa
Journal:  Microb Ecol       Date:  2021-07-06       Impact factor: 4.552

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.