Literature DB >> 33837855

Diversity of fungal DNA in lake sediments on Vega Island, north-east Antarctic Peninsula assessed using DNA metabarcoding.

Mayara Baptistucci Ogaki1, Paulo Eduardo Aguiar Saraiva Câmara2, Otávio Henrique Bezerra Pinto3, Juan Manuel Lirio4, Silvia H Coria4, Rosemary Vieira5, Micheline Carvalho-Silva2, Peter Convey6, Carlos Augusto Rosa1, Luiz Henrique Rosa7.   

Abstract

We assessed the diversity of fungal DNA present in sediments of three lakes on Vega Island, north-east Antarctic Peninsula using metabarcoding through high-throughput sequencing (HTS). A total of 640,902 fungal DNA reads were detected, which were assigned to 224 taxa of the phyla Ascomycota, Rozellomycota, Basidiomycota, Chytridiomycota and Mortierellomycota, in rank order of abundance. The most abundant genera were Pseudogymnoascus, Penicillium and Mortierella. However, a majority (423,508, 66%) of the reads, representing by 43 ASVs, could only be assigned at higher taxonomic levels and may represent taxa not currently included in the sequence databases used or be new or previously unreported taxa present in Antarctic lakes. The three lakes were characterized by high sequence diversity, richness, and moderate dominance indices. The ASVs were dominated by psychrotolerant and cosmopolitan cold-adapted Ascomycota, Basidiomycota and Mortierellomycota commonly reported in Antarctic environments. However, other taxa detected included unidentified members of Rozellomycota and Chytridiomycota species not previously reported in Antarctic lakes. The assigned diversity was composed mainly of taxa recognized as decomposers and pathogens of plants and invertebrates.

Keywords:  Antarctica; Extremophile; Fungi; High-throughput sequencing; Taxonomy

Mesh:

Substances:

Year:  2021        PMID: 33837855     DOI: 10.1007/s00792-021-01226-z

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  35 in total

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10.  Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin.

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  3 in total

1.  Fungal diversity in a sediment core from climate change impacted Boeckella Lake, Hope Bay, north-eastern Antarctic Peninsula assessed using metabarcoding.

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Journal:  Extremophiles       Date:  2022-05-02       Impact factor: 2.395

2.  Green algae (Viridiplantae) in sediments from three lakes on Vega Island, Antarctica, assessed using DNA metabarcoding.

Authors:  Bárbara Medeiros Fonseca; Paulo Eduardo Aguiar Saraiva Câmara; Mayara Baptistucci Ogaki; Otávio Henrique Bezerra Pinto; Juan Manuel Lirio; Silvia H Coria; Rosemary Vieira; Micheline Carvalho-Silva; Eduardo Toledo Amorim; Peter Convey; Luiz Henrique Rosa
Journal:  Mol Biol Rep       Date:  2021-10-22       Impact factor: 2.316

3.  Diversity, distribution and ecology of fungal communities present in Antarctic lake sediments uncovered by DNA metabarcoding.

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