Literature DB >> 34228196

Fungi in the Antarctic Cryosphere: Using DNA Metabarcoding to Reveal Fungal Diversity in Glacial Ice from the Antarctic Peninsula Region.

Graciéle Cunha Alves de Menezes1, Paulo E A S Câmara2, Otávio Henrique Bezerra Pinto3, Peter Convey4,5, Micheline Carvalho-Silva2, Jefferson Cardia Simões6, Carlos Augusto Rosa1, Luiz Henrique Rosa7.   

Abstract

We assessed fungal diversity present in glacial from the Antarctic Peninsula using DNA metabarcoding through high-throughput sequencing (HTS). We detected a total of 353,879 fungal DNA reads, representing 94 genera and 184 taxa, in glacial ice fragments obtained from seven sites in the north-west Antarctic Peninsula and South Shetland Islands. The phylum Ascomycota dominated the sequence diversity, followed by Basidiomycota and Mortierellomycota. Penicillium sp., Cladosporium sp., Penicillium atrovenetum, Epicoccum nigrum, Pseudogymnoascus sp. 1, Pseudogymnoascus sp. 2, Phaeosphaeriaceae sp. and Xylaria grammica were the most dominant taxa, respectively. However, the majority of the fungal diversity comprised taxa of rare and intermediate relative abundance, predominately known mesophilic fungi. High indices of diversity and richness were calculated, along with moderate index of dominance, which varied among the different sampling sites. Only 26 (14%) of the total fungal taxa detected were present at all sampling sites. The identified diversity was dominated by saprophytic taxa, followed by known plant and animal pathogens and a low number of symbiotic fungi. Our data suggest that Antarctic glacial ice may represent a hotspot of previously unreported fungal diversity; however, further studies are required to integrate HTS and culture approaches to confirm viability of the taxa detected.
© 2021. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Antarctica; Ecology; Environmental DNA; Extremophiles

Mesh:

Substances:

Year:  2021        PMID: 34228196     DOI: 10.1007/s00248-021-01792-x

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  39 in total

1.  STUDIES OF FUNGI AT AMUNDSEN-SCOTT IGY SOUTH POLE BASE (1957).

Authors:  P H JACOBS; H C TAYLOR; J C SHAFER
Journal:  Arch Dermatol       Date:  1964-01

2.  Comparisons of protocols for decontamination of environmental ice samples for biological and molecular examinations.

Authors:  S O Rogers; V Theraisnathan; L J Ma; Y Zhao; G Zhang; S-G Shin; J D Castello; W T Starmer
Journal:  Appl Environ Microbiol       Date:  2004-04       Impact factor: 4.792

3.  Glaciers and ice sheets as a biome.

Authors:  Alexandre M Anesio; Johanna Laybourn-Parry
Journal:  Trends Ecol Evol       Date:  2011-10-12       Impact factor: 17.712

4.  Isolation of fungi from Lake Vostok accretion ice.

Authors:  Tom D'Elia; Ram Veerapaneni; Vincent Theraisnathan; Scott O Rogers
Journal:  Mycologia       Date:  2009 Nov-Dec       Impact factor: 2.696

5.  Penicillium mycobiota in arctic subglacial ice.

Authors:  Silva Sonjak; Jens C Frisvad; Nina Gunde-Cimerman
Journal:  Microb Ecol       Date:  2006-08-08       Impact factor: 4.552

6.  Microbial communities and their potential for degradation of dissolved organic carbon in cryoconite hole environments of Himalaya and Antarctica.

Authors:  Aritri Sanyal; Runa Antony; Gautami Samui; Meloth Thamban
Journal:  Microbiol Res       Date:  2018-01-31       Impact factor: 5.415

7.  Fungi in glacial ice of Antarctica: diversity, distribution and bioprospecting of bioactive compounds.

Authors:  Graciéle Cunha Alves de Menezes; Bárbara Alves Porto; Soraya Sander Amorim; Carlos Leomar Zani; Tânia Maria de Almeida Alves; Policarpo Ademar Sales Junior; Silvane Maria Fonseca Murta; Jefferson Cardia Simões; Betania Barros Cota; Carlos Augusto Rosa; Luiz Henrique Rosa
Journal:  Extremophiles       Date:  2020-03-10       Impact factor: 2.395

8.  DNA metabarcoding of fungal diversity in air and snow of Livingston Island, South Shetland Islands, Antarctica.

Authors:  Luiz Henrique Rosa; Otávio Henrique Bezerra Pinto; Tina Šantl-Temkiv; Peter Convey; Micheline Carvalho-Silva; Carlos Augusto Rosa; Paulo E A S Câmara
Journal:  Sci Rep       Date:  2020-12-11       Impact factor: 4.379

9.  Microbial analyses of ancient ice core sections from greenland and antarctica.

Authors:  Caitlin Knowlton; Ram Veerapaneni; Tom D'Elia; Scott O Rogers
Journal:  Biology (Basel)       Date:  2013-01-25

10.  Fungal and bacterial diversity of Svalbard subglacial ice.

Authors:  L Perini; C Gostinčar; N Gunde-Cimerman
Journal:  Sci Rep       Date:  2019-12-27       Impact factor: 4.379

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  1 in total

Review 1.  Microbial Community Composition of the Antarctic Ecosystems: Review of the Bacteria, Fungi, and Archaea Identified through an NGS-Based Metagenomics Approach.

Authors:  Vesselin V Doytchinov; Svetoslav G Dimov
Journal:  Life (Basel)       Date:  2022-06-18
  1 in total

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