Literature DB >> 35499659

Fungal diversity in a sediment core from climate change impacted Boeckella Lake, Hope Bay, north-eastern Antarctic Peninsula assessed using metabarcoding.

Luiz Henrique Rosa1, Mayara Baptistucci Ogaki2, Juan Manuel Lirio3, Rosemary Vieira4, Silvia H Coria3, Otávio Henrique Bezerra Pinto5, Micheline Carvalho-Silva6, Peter Convey7,8, Carlos Augusto Rosa2, Paulo Eduardo Aguiar Saraiva Câmara6.   

Abstract

We studied the fungal DNA present in a lake sediment core obtained from Trinity Peninsula, Hope Bay, north-eastern Antarctic Peninsula, using metabarcoding through high-throughput sequencing (HTS). Sequences obtained were assigned to 146 amplicon sequence variants (ASVs) primarily representing unknown fungi, followed by the phyla Ascomycota, Rozellomycota, Basidiomycota, Chytridiomycota and Mortierellomycota. The most abundant taxa were assigned to Fungal sp., Pseudeurotium hygrophilum, Rozellomycota sp. 1, Pseudeurotiaceae sp. 1 and Chytridiomycota sp. 1. The majority of the DNA reads, representing 40 ASVs, could only be assigned at higher taxonomic levels and may represent taxa not currently included in the sequence databases consulted and/or be previously undescribed fungi. Different sections of the core were characterized by high sequence diversity, richness and moderate ecological dominance indices. The assigned diversity was dominated by cosmopolitan cold-adapted fungi, including known saprotrophic, plant and animal pathogenic and symbiotic taxa. Despite the overall dominance of Ascomycota and Basidiomycota and psychrophilic Mortierellomycota, members of the cryptic phyla Rozellomycota and Chytridiomycota were also detected in abundance. As Boeckella Lake may cease to exist in approaching decades due the effects of local climatic changes, it also an important location for the study of the impacts of these changes on Antarctic microbial diversity.
© 2022. The Author(s), under exclusive licence to Springer Japan KK, part of Springer Nature.

Entities:  

Keywords:  Antarctica; Ecology; Extremophile; Fungi; Taxonomy

Mesh:

Year:  2022        PMID: 35499659     DOI: 10.1007/s00792-022-01264-1

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  29 in total

1.  Investigations of fungal diversity in wooden structures and soils at historic sites on the Antarctic Peninsula.

Authors:  Brett E Arenz; Robert A Blanchette
Journal:  Can J Microbiol       Date:  2009-01       Impact factor: 2.419

2.  Fungal diversity present on rocks from a polar desert in continental Antarctica assessed using DNA metabarcoding.

Authors:  Graciéle Cunha Alves de Menezes; Paulo E A S Câmara; Otávio Henrique Bezerra Pinto; Micheline Carvalho-Silva; Fábio Soares Oliveira; Caroline Delpupo Souza; Carlos Ernesto G Reynaud Schaefer; Peter Convey; Carlos Augusto Rosa; Luiz Henrique Rosa
Journal:  Extremophiles       Date:  2021-03-02       Impact factor: 2.395

3.  Assessment of fungal diversity present in lakes of Maritime Antarctica using DNA metabarcoding: a temporal microcosm experiment.

Authors:  Láuren M D de Souza; Mayara B Ogaki; Paulo E A S Câmara; Otávio H B Pinto; Peter Convey; Micheline Carvalho-Silva; Carlos A Rosa; Luiz H Rosa
Journal:  Extremophiles       Date:  2021-01-08       Impact factor: 2.395

4.  Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Authors:  Evan Bolyen; Jai Ram Rideout; Matthew R Dillon; Nicholas A Bokulich; Christian C Abnet; Gabriel A Al-Ghalith; Harriet Alexander; Eric J Alm; Manimozhiyan Arumugam; Francesco Asnicar; Yang Bai; Jordan E Bisanz; Kyle Bittinger; Asker Brejnrod; Colin J Brislawn; C Titus Brown; Benjamin J Callahan; Andrés Mauricio Caraballo-Rodríguez; John Chase; Emily K Cope; Ricardo Da Silva; Christian Diener; Pieter C Dorrestein; Gavin M Douglas; Daniel M Durall; Claire Duvallet; Christian F Edwardson; Madeleine Ernst; Mehrbod Estaki; Jennifer Fouquier; Julia M Gauglitz; Sean M Gibbons; Deanna L Gibson; Antonio Gonzalez; Kestrel Gorlick; Jiarong Guo; Benjamin Hillmann; Susan Holmes; Hannes Holste; Curtis Huttenhower; Gavin A Huttley; Stefan Janssen; Alan K Jarmusch; Lingjing Jiang; Benjamin D Kaehler; Kyo Bin Kang; Christopher R Keefe; Paul Keim; Scott T Kelley; Dan Knights; Irina Koester; Tomasz Kosciolek; Jorden Kreps; Morgan G I Langille; Joslynn Lee; Ruth Ley; Yong-Xin Liu; Erikka Loftfield; Catherine Lozupone; Massoud Maher; Clarisse Marotz; Bryan D Martin; Daniel McDonald; Lauren J McIver; Alexey V Melnik; Jessica L Metcalf; Sydney C Morgan; Jamie T Morton; Ahmad Turan Naimey; Jose A Navas-Molina; Louis Felix Nothias; Stephanie B Orchanian; Talima Pearson; Samuel L Peoples; Daniel Petras; Mary Lai Preuss; Elmar Pruesse; Lasse Buur Rasmussen; Adam Rivers; Michael S Robeson; Patrick Rosenthal; Nicola Segata; Michael Shaffer; Arron Shiffer; Rashmi Sinha; Se Jin Song; John R Spear; Austin D Swafford; Luke R Thompson; Pedro J Torres; Pauline Trinh; Anupriya Tripathi; Peter J Turnbaugh; Sabah Ul-Hasan; Justin J J van der Hooft; Fernando Vargas; Yoshiki Vázquez-Baeza; Emily Vogtmann; Max von Hippel; William Walters; Yunhu Wan; Mingxun Wang; Jonathan Warren; Kyle C Weber; Charles H D Williamson; Amy D Willis; Zhenjiang Zech Xu; Jesse R Zaneveld; Yilong Zhang; Qiyun Zhu; Rob Knight; J Gregory Caporaso
Journal:  Nat Biotechnol       Date:  2019-08       Impact factor: 54.908

5.  Diversity and pharmaceutical screening of fungi from benthic mats of Antarctic lakes.

Authors:  Mara Brunati; Jose Luis Rojas; Federica Sponga; Ismaela Ciciliato; Daniele Losi; Elke Göttlich; Sybren de Hoog; Olga Genilloud; Flavia Marinelli
Journal:  Mar Genomics       Date:  2009-05-12       Impact factor: 1.710

6.  DADA2: High-resolution sample inference from Illumina amplicon data.

Authors:  Benjamin J Callahan; Paul J McMurdie; Michael J Rosen; Andrew W Han; Amy Jo A Johnson; Susan P Holmes
Journal:  Nat Methods       Date:  2016-05-23       Impact factor: 28.547

7.  A thin ice layer segregates two distinct fungal communities in Antarctic brines from Tarn Flat (Northern Victoria Land).

Authors:  Luigimaria Borruso; Ciro Sannino; Laura Selbmann; Dario Battistel; Laura Zucconi; Maurizio Azzaro; Benedetta Turchetti; Pietro Buzzini; Mauro Guglielmin
Journal:  Sci Rep       Date:  2018-04-26       Impact factor: 4.379

8.  Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species.

Authors:  Shilin Chen; Hui Yao; Jianping Han; Chang Liu; Jingyuan Song; Linchun Shi; Yingjie Zhu; Xinye Ma; Ting Gao; Xiaohui Pang; Kun Luo; Ying Li; Xiwen Li; Xiaocheng Jia; Yulin Lin; Christine Leon
Journal:  PLoS One       Date:  2010-01-07       Impact factor: 3.240

9.  Fungal Diversity in a Dark Oligotrophic Volcanic Ecosystem (DOVE) on Mount Erebus, Antarctica.

Authors:  Laurie Connell; Hubert Staudigel
Journal:  Biology (Basel)       Date:  2013-05-30

10.  Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin.

Authors:  Nicholas A Bokulich; Benjamin D Kaehler; Jai Ram Rideout; Matthew Dillon; Evan Bolyen; Rob Knight; Gavin A Huttley; J Gregory Caporaso
Journal:  Microbiome       Date:  2018-05-17       Impact factor: 14.650

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  3 in total

1.  Communities of culturable freshwater fungi present in Antarctic lakes and detection of their low-temperature-active enzymes.

Authors:  Láuren Machado Drumond de Souza; Mayara Bapstitucci Ogaki; Elisa Amorim Amâncio Teixeira; Graciéle Cunha Alves de Menezes; Peter Convey; Carlos Augusto Rosa; Luiz Henrique Rosa
Journal:  Braz J Microbiol       Date:  2022-10-24       Impact factor: 2.214

2.  Diversity, distribution and ecology of fungal communities present in Antarctic lake sediments uncovered by DNA metabarcoding.

Authors:  Láuren Machado Drumond de Souza; Juan Manuel Lirio; Silvia Herminda Coria; Fabyano Alvares Cardoso Lopes; Peter Convey; Micheline Carvalho-Silva; Fábio Soares de Oliveira; Carlos Augusto Rosa; Paulo Eduardo Aguiar Saraiva Câmara; Luiz Henrique Rosa
Journal:  Sci Rep       Date:  2022-05-19       Impact factor: 4.996

3.  The First Comprehensive Biodiversity Study of Culturable Fungal Communities Inhabiting Cryoconite Holes in the Werenskiold Glacier on Spitsbergen (Svalbard Archipelago, Arctic).

Authors:  Justyna Borzęcka; Jakub Suchodolski; Bartłomiej Dudek; Lena Matyaszczyk; Klaudyna Spychała; Rafał Ogórek
Journal:  Biology (Basel)       Date:  2022-08-16
  3 in total

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