Literature DB >> 33649304

DNA stability: a central design consideration for DNA data storage systems.

Karishma Matange1, James M Tuck2, Albert J Keung3.   

Abstract

Data storage in DNA is a rapidly evolving technology that could be a transformative solution for the rising energy, materials, and space needs of modern information storage. Given that the information medium is DNA itself, its stability under different storage and processing conditions will fundamentally impact and constrain design considerations and data system capabilities. Here we analyze the storage conditions, molecular mechanisms, and stabilization strategies influencing DNA stability and pose specific design configurations and scenarios for future systems that best leverage the considerable advantages of DNA storage.

Entities:  

Year:  2021        PMID: 33649304     DOI: 10.1038/s41467-021-21587-5

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  26 in total

1.  Amino acid racemization in amber-entombed insects: implications for DNA preservation.

Authors:  J L Bada; X S Wang; H N Poinar; S Paabo; G O Poinar
Journal:  Geochim Cosmochim Acta       Date:  1994       Impact factor: 5.010

2.  Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.

Authors:  J D WATSON; F H CRICK
Journal:  Nature       Date:  1953-04-25       Impact factor: 49.962

Review 3.  Synthetic DNA Synthesis and Assembly: Putting the Synthetic in Synthetic Biology.

Authors:  Randall A Hughes; Andrew D Ellington
Journal:  Cold Spring Harb Perspect Biol       Date:  2017-01-03       Impact factor: 10.005

4.  DNA Fountain enables a robust and efficient storage architecture.

Authors:  Yaniv Erlich; Dina Zielinski
Journal:  Science       Date:  2017-03-03       Impact factor: 47.728

5.  How to stop data centres from gobbling up the world's electricity.

Authors:  Nicola Jones
Journal:  Nature       Date:  2018-09       Impact factor: 49.962

6.  The unusual origin of the polymerase chain reaction.

Authors:  K B Mullis
Journal:  Sci Am       Date:  1990-04       Impact factor: 2.142

7.  Assessment of DNA encapsulation, a new room-temperature DNA storage method.

Authors:  Dominique Clermont; Sylvain Santoni; Safa Saker; Maite Gomard; Eliane Gardais; Chantal Bizet
Journal:  Biopreserv Biobank       Date:  2014-06       Impact factor: 2.300

8.  A DNA-of-things storage architecture to create materials with embedded memory.

Authors:  Yaniv Erlich; Robert N Grass; Julian Koch; Silvan Gantenbein; Kunal Masania; Wendelin J Stark
Journal:  Nat Biotechnol       Date:  2019-12-09       Impact factor: 54.908

9.  Molecular computation of solutions to combinatorial problems.

Authors:  L M Adleman
Journal:  Science       Date:  1994-11-11       Impact factor: 47.728

Review 10.  Molecular digital data storage using DNA.

Authors:  Luis Ceze; Jeff Nivala; Karin Strauss
Journal:  Nat Rev Genet       Date:  2019-08       Impact factor: 53.242

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  11 in total

1.  Formation and Repair of an Interstrand DNA Cross-Link Arising from a Common Endogenous Lesion.

Authors:  Kurt Housh; Jay S Jha; Zhiyu Yang; Tuhin Haldar; Kevin M Johnson; Jiekai Yin; Yinsheng Wang; Kent S Gates
Journal:  J Am Chem Soc       Date:  2021-09-13       Impact factor: 15.419

2.  Information decay and enzymatic information recovery for DNA data storage.

Authors:  Linda C Meiser; Andreas L Gimpel; Tejas Deshpande; Gabriela Libort; Weida D Chen; Reinhard Heckel; Bichlien H Nguyen; Karin Strauss; Wendelin J Stark; Robert N Grass
Journal:  Commun Biol       Date:  2022-10-20

3.  The bug in a teacup-monitoring arthropod-plant associations with environmental DNA from dried plant material.

Authors:  Henrik Krehenwinkel; Sven Weber; Sven Künzel; Susan R Kennedy
Journal:  Biol Lett       Date:  2022-06-15       Impact factor: 3.812

Review 4.  Design considerations for advancing data storage with synthetic DNA for long-term archiving.

Authors:  Chisom Ezekannagha; Anke Becker; Dominik Heider; Georges Hattab
Journal:  Mater Today Bio       Date:  2022-05-27

5.  Bioorthogonal information storage in L-DNA with a high-fidelity mirror-image Pfu DNA polymerase.

Authors:  Chuyao Fan; Qiang Deng; Ting F Zhu
Journal:  Nat Biotechnol       Date:  2021-07-29       Impact factor: 68.164

6.  PAMAM-calix-dendrimers: Synthesis and Thiacalixarene Conformation Effect on DNA Binding.

Authors:  Olga Mostovaya; Pavel Padnya; Igor Shiabiev; Timur Mukhametzyanov; Ivan Stoikov
Journal:  Int J Mol Sci       Date:  2021-11-02       Impact factor: 5.923

7.  Multi-Domains in a Single Lattice Formed by DNA Self-Assembly.

Authors:  Soojin Jo; Sungjin Lee; Suyoun Park; Anshula Tandon; Thi Bich Ngoc Nguyen; Thi Hong Nhung Vu; Muhammad Tayyab Raza; Sung Ha Park
Journal:  ACS Omega       Date:  2022-07-19

8.  In vivo processing of digital information molecularly with targeted specificity and robust reliability.

Authors:  Yangyi Liu; Yubin Ren; Jingjing Li; Fan Wang; Fei Wang; Chao Ma; Dong Chen; Xingyu Jiang; Chunhai Fan; Hongjie Zhang; Kai Liu
Journal:  Sci Adv       Date:  2022-08-05       Impact factor: 14.957

9.  Hidden Addressing Encoding for DNA Storage.

Authors:  Penghao Wang; Ziniu Mu; Lijun Sun; Shuqing Si; Bin Wang
Journal:  Front Bioeng Biotechnol       Date:  2022-07-19

10.  Promiscuous molecules for smarter file operations in DNA-based data storage.

Authors:  Kyle J Tomek; Kevin Volkel; Elaine W Indermaur; James M Tuck; Albert J Keung
Journal:  Nat Commun       Date:  2021-06-10       Impact factor: 14.919

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