| Literature DB >> 33647767 |
Margherita Baldassarri1, Nicola Picchiotti2, Francesca Fava3, Chiara Fallerini1, Elisa Benetti4, Sergio Daga1, Floriana Valentino1, Gabriella Doddato1, Simone Furini4, Annarita Giliberti1, Rossella Tita5, Sara Amitrano5, Mirella Bruttini3, Susanna Croci1, Ilaria Meloni1, Anna Maria Pinto5, Nicola Iuso1, Chiara Gabbi6, Francesca Sciarra7, Mary Anna Venneri7, Marco Gori8, Maurizio Sanarico9, Francis P Crawley10, Uberto Pagotto11, Flaminia Fanelli11, Marco Mezzullo11, Elena Dominguez-Garrido12, Laura Planas-Serra13, Agatha Schlüter13, Roger Colobran14, Pere Soler-Palacin15, Pablo Lapunzina16, Jair Tenorio16, Aurora Pujol17, Maria Grazia Castagna18, Marco Marcelli19, Andrea M Isidori7, Alessandra Renieri20, Elisa Frullanti1, Francesca Mari3.
Abstract
BACKGROUND: While SARS-CoV-2 similarly infects men and women, COVID-19 outcome is less favorable in men. Variability in COVID-19 severity may be explained by differences in the host genome.Entities:
Keywords: Androgen receptor gene; COVID-19; LASSO logistic regression; Testosterone; Viral infection and host genome; WES
Mesh:
Substances:
Year: 2021 PMID: 33647767 PMCID: PMC7908850 DOI: 10.1016/j.ebiom.2021.103246
Source DB: PubMed Journal: EBioMedicine ISSN: 2352-3964 Impact factor: 8.143
Demographics characteristics of the Italian GEN-COVID Cohort and NCC study.
| Intubation | CPAP/BiPAP Ventilation | Oxygen Therapy | Hospitalized w/o respiratory support | Oligo | ||
|---|---|---|---|---|---|---|
| Number of Sybjects | 108 | 230 | 352 | 188 | 300 | |
| Male/Female | 80/28 | 157/73 | 208/144 | 104/84 | 116/184 | |
| Age males (years) | 61,52±11,43 | 62,75±13,48 | 63,41±14,53 | 55,99±15,44 | 47,40±13,23 | |
| Age females (years) | 63,71±13,96 | 66,23±15,25 | 68,40±14,74 | 52,88±16,39 | 48,61±11,06 | |
| Number of Subjects | 338 | 300 | ||||
| Male/Female | 237/101 | 116/184 | ||||
| Age males (years) | 62,34±12,84 | 47,40±13,23 | ||||
| Age females (years) | 65,53±14,94 | 48,61±11,06 | ||||
Oligosymtpomatic: individuals with minor symptoms of COVID-19 (mild fever, cough, sore throat, etc.)
Fig. 1LASSO logistic regression. The bar of the LASSO logistic regression beta coefficients represents the importance of each feature for the classification task (Fig. 1) (Panel a). The positive beta coefficients of the LASSO (upward bars) reflect a susceptible behaviour of the features to the target COVID-19 disease, whereas the negative coefficients (downward bars) a protective action. The calculated odd ratio of AR short repeats (≤22) is 0.79 i.e. protective. Therefore, the odd ratio of long repeats (≥23) is 1/0.79 = 1.27 i.e. severity. Panel b: Table reporting the averages and the standard deviations of accuracy, precision, sensitivity, specificity, and ROC-AUC scores for the 10-folds of the cross-validation.
PolyQ alleles correlation with COVID-19 outcome - males with age <60.
| Males <60 | |||
|---|---|---|---|
| <22 | >23 | ||
| 52 (59,1%) | 36 (40,9%) | 88 (48,1%) | |
| 71 (74,7%) | 24 (25,3%) | 95 (51,9%) | |
| 123 (67,2%) | 60 (32,8%) | 183 (Grand Total) | |
p-value (cases vs controls) =0.024
Validation in Spanish cohort
| Spanish validation (χ2) Males global | |||
|---|---|---|---|
| ≤22 | ≥23 | ||
| 51 (43,6%) | 66 (56,4%) | 117 (74,1%) | |
| 27 (65,9%) | 14 (34,1%) | 41 (25,9%) | |
| 78 (49,4%) | 80 (50,6%) | 158 (Grand Total) | |
p-value (cases vs controls)=0.014 (Significant at p<0.05)
Fig. 2Relationship between Total Testosterone and polyQ repeats in the case and the control group. Box-plot showing values of Total Testosterone (TT), expressed in nmol/L, in subjects with shorter (≤22) and longer (≥23) polyQ repeats in AR gene grouped between controls (left panel) and cases (right panel). The TT median value, represented by the black horizontal line, is higher in patients with ≥23 polyQ repeats in the case group, (**p-value = 0.023; Mann-Whitney U test). No statistically significant difference was present in the control group (p-value = 0.088; Mann-Whitney U test).
Correlation between polyQ repeats in AR gene and laboratory values
| CRP M≥60y cases | CRP M<60y cases | ||||
|---|---|---|---|---|---|
| Triplets | Mean | Count | Triplets | Mean | Count |
| 48,21 | 78 | 54,5 | 43 | ||
| 55,92 | 38 | 26,41 | 29 | ||
| p-value = 0.018 (Significant at p<0,05) | p-value = 0.2 | ||||