Literature DB >> 32972995

Inborn errors of type I IFN immunity in patients with life-threatening COVID-19.

Paul Bastard1,2, Zhiyong Liu3, Jérémie Le Pen4, Marcela Moncada-Velez3, Jie Chen3, Masato Ogishi3, Ira K D Sabli5, Stephanie Hodeib5, Cecilia Korol1, Jérémie Rosain1,2, Kaya Bilguvar6, Junqiang Ye7, Alexandre Bolze8, Benedetta Bigio3, Rui Yang3, Andrés Augusto Arias3,9,10, Qinhua Zhou3, Yu Zhang11,12, Richard P Lifton13,14,15, Shen-Ying Zhang3,1,2, Guy Gorochov16, Vivien Béziat3,1,2, Emmanuelle Jouanguy3,1,2, Vanessa Sancho-Shimizu5, Charles M Rice4, Laurent Abel3,1,2, Luigi D Notarangelo11,12, Aurélie Cobat3,1,2, Helen C Su11,12, Jean-Laurent Casanova17,1,2,18,19, Qian Zhang3, Fanny Onodi20, Sarantis Korniotis20, Léa Karpf20, Quentin Philippot1,2, Marwa Chbihi1,2, Lucie Bonnet-Madin21, Karim Dorgham16, Nikaïa Smith22, William M Schneider4, Brandon S Razooky4, Hans-Heinrich Hoffmann4, Eleftherios Michailidis4, Leen Moens23, Ji Eun Han3, Lazaro Lorenzo1,2, Lucy Bizien1,2, Philip Meade24, Anna-Lena Neehus1,2, Aileen Camille Ugurbil3, Aurélien Corneau25, Gaspard Kerner1,2, Peng Zhang3, Franck Rapaport3, Yoann Seeleuthner1,2, Jeremy Manry1,2, Cecile Masson26, Yohann Schmitt26, Agatha Schlüter27, Tom Le Voyer1,2, Taushif Khan28, Juan Li3, Jacques Fellay29,30,31, Lucie Roussel32, Mohammad Shahrooei33,34, Mohammed F Alosaimi35, Davood Mansouri36,37,38, Haya Al-Saud39, Fahd Al-Mulla40, Feras Almourfi39, Saleh Zaid Al-Muhsen41, Fahad Alsohime35, Saeed Al Turki42,43, Rana Hasanato35, Diederik van de Beek44, Andrea Biondi45, Laura Rachele Bettini45, Mariella D'Angio'45, Paolo Bonfanti46, Luisa Imberti47, Alessandra Sottini47, Simone Paghera47, Eugenia Quiros-Roldan48, Camillo Rossi49, Andrew J Oler50, Miranda F Tompkins51, Camille Alba51, Isabelle Vandernoot52, Jean-Christophe Goffard53, Guillaume Smits52, Isabelle Migeotte54, Filomeen Haerynck55, Pere Soler-Palacin56, Andrea Martin-Nalda56, Roger Colobran57, Pierre-Emmanuel Morange58, Sevgi Keles59, Fatma Çölkesen60, Tayfun Ozcelik61, Kadriye Kart Yasar62, Sevtap Senoglu62, Şemsi Nur Karabela62, Carlos Rodríguez-Gallego63,64, Giuseppe Novelli65, Sami Hraiech66, Yacine Tandjaoui-Lambiotte67,68, Xavier Duval69,70, Cédric Laouénan69,70,71, Andrew L Snow72, Clifton L Dalgard51,73, Joshua D Milner74, Donald C Vinh32, Trine H Mogensen75,76, Nico Marr28,77, András N Spaan3,78, Bertrand Boisson3,1,2, Stéphanie Boisson-Dupuis3,1,2, Jacinta Bustamante3,1,2,79, Anne Puel3,1,2, Michael J Ciancanelli3,80, Isabelle Meyts23,81, Tom Maniatis7,82, Vassili Soumelis20,83, Ali Amara21, Michel Nussenzweig84,18, Adolfo García-Sastre24,85,86,87, Florian Krammer24, Aurora Pujol27, Darragh Duffy22.   

Abstract

Clinical outcome upon infection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ranges from silent infection to lethal coronavirus disease 2019 (COVID-19). We have found an enrichment in rare variants predicted to be loss-of-function (LOF) at the 13 human loci known to govern Toll-like receptor 3 (TLR3)- and interferon regulatory factor 7 (IRF7)-dependent type I interferon (IFN) immunity to influenza virus in 659 patients with life-threatening COVID-19 pneumonia relative to 534 subjects with asymptomatic or benign infection. By testing these and other rare variants at these 13 loci, we experimentally defined LOF variants underlying autosomal-recessive or autosomal-dominant deficiencies in 23 patients (3.5%) 17 to 77 years of age. We show that human fibroblasts with mutations affecting this circuit are vulnerable to SARS-CoV-2. Inborn errors of TLR3- and IRF7-dependent type I IFN immunity can underlie life-threatening COVID-19 pneumonia in patients with no prior severe infection.
Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2020        PMID: 32972995      PMCID: PMC7857407          DOI: 10.1126/science.abd4570

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  42 in total

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Authors:  Vanessa Sancho-Shimizu; Rebeca Pérez de Diego; Lazaro Lorenzo; Rabih Halwani; Abdullah Alangari; Elisabeth Israelsson; Sylvie Fabrega; Annabelle Cardon; Jerome Maluenda; Megumi Tatematsu; Farhad Mahvelati; Melina Herman; Michael Ciancanelli; Yiqi Guo; Zobaida AlSum; Nouf Alkhamis; Abdulkarim S Al-Makadma; Ata Ghadiri; Soraya Boucherit; Sabine Plancoulaine; Capucine Picard; Flore Rozenberg; Marc Tardieu; Pierre Lebon; Emmanuelle Jouanguy; Nima Rezaei; Tsukasa Seya; Misako Matsumoto; Damien Chaussabel; Anne Puel; Shen-Ying Zhang; Laurent Abel; Saleh Al-Muhsen; Jean-Laurent Casanova
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2.  CANOES: detecting rare copy number variants from whole exome sequencing data.

Authors:  Daniel Backenroth; Jason Homsy; Laura R Murillo; Joe Glessner; Edwin Lin; Martina Brueckner; Richard Lifton; Elizabeth Goldmuntz; Wendy K Chung; Yufeng Shen
Journal:  Nucleic Acids Res       Date:  2014-04-25       Impact factor: 16.971

3.  Infectious disease. Life-threatening influenza and impaired interferon amplification in human IRF7 deficiency.

Authors:  Michael J Ciancanelli; Sarah X L Huang; Priya Luthra; Hannah Garner; Yuval Itan; Stefano Volpi; Fabien G Lafaille; Céline Trouillet; Mirco Schmolke; Randy A Albrecht; Elisabeth Israelsson; Hye Kyung Lim; Melina Casadio; Tamar Hermesh; Lazaro Lorenzo; Lawrence W Leung; Vincent Pedergnana; Bertrand Boisson; Satoshi Okada; Capucine Picard; Benedicte Ringuier; Françoise Troussier; Damien Chaussabel; Laurent Abel; Isabelle Pellier; Luigi D Notarangelo; Adolfo García-Sastre; Christopher F Basler; Frédéric Geissmann; Shen-Ying Zhang; Hans-Willem Snoeck; Jean-Laurent Casanova
Journal:  Science       Date:  2015-03-26       Impact factor: 47.728

4.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

5.  Multibatch Cytometry Data Integration for Optimal Immunophenotyping.

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Journal:  J Immunol       Date:  2020-11-23       Impact factor: 5.422

Review 6.  Human inborn errors of immunity: An expanding universe.

Authors:  Luigi D Notarangelo; Rosa Bacchetta; Jean-Laurent Casanova; Helen C Su
Journal:  Sci Immunol       Date:  2020-07-10

Review 7.  Lethal Infectious Diseases as Inborn Errors of Immunity: Toward a Synthesis of the Germ and Genetic Theories.

Authors:  Jean-Laurent Casanova; Laurent Abel
Journal:  Annu Rev Pathol       Date:  2020-04-14       Impact factor: 23.472

8.  Convergent antibody responses to SARS-CoV-2 in convalescent individuals.

Authors:  Davide F Robbiani; Christian Gaebler; Frauke Muecksch; Julio C C Lorenzi; Zijun Wang; Alice Cho; Marianna Agudelo; Christopher O Barnes; Anna Gazumyan; Shlomo Finkin; Thomas Hägglöf; Thiago Y Oliveira; Charlotte Viant; Arlene Hurley; Hans-Heinrich Hoffmann; Katrina G Millard; Rhonda G Kost; Melissa Cipolla; Kristie Gordon; Filippo Bianchini; Spencer T Chen; Victor Ramos; Roshni Patel; Juan Dizon; Irina Shimeliovich; Pilar Mendoza; Harald Hartweger; Lilian Nogueira; Maggi Pack; Jill Horowitz; Fabian Schmidt; Yiska Weisblum; Eleftherios Michailidis; Alison W Ashbrook; Eric Waltari; John E Pak; Kathryn E Huey-Tubman; Nicholas Koranda; Pauline R Hoffman; Anthony P West; Charles M Rice; Theodora Hatziioannou; Pamela J Bjorkman; Paul D Bieniasz; Marina Caskey; Michel C Nussenzweig
Journal:  Nature       Date:  2020-06-18       Impact factor: 69.504

9.  Human Inborn Errors of Immunity: 2019 Update of the IUIS Phenotypical Classification.

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Journal:  J Clin Immunol       Date:  2020-02-11       Impact factor: 8.317

10.  Influenza Virus Infection Induces a Narrow Antibody Response in Children but a Broad Recall Response in Adults.

Authors:  Philip Meade; Guillermina Kuan; Shirin Strohmeier; Hannah E Maier; Fatima Amanat; Angel Balmaseda; Kimihito Ito; Ericka Kirkpatrick; Andres Javier; Lionel Gresh; Raffael Nachbagauer; Aubree Gordon; Florian Krammer
Journal:  mBio       Date:  2020-01-21       Impact factor: 7.867

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Authors:  Saskia Trump; Soeren Lukassen; Markus S Anker; Robert Lorenz Chua; Johannes Liebig; Loreen Thürmann; Victor Max Corman; Marco Binder; Jennifer Loske; Christina Klasa; Teresa Krieger; Bianca P Hennig; Marey Messingschlager; Fabian Pott; Julia Kazmierski; Sven Twardziok; Jan Philipp Albrecht; Jürgen Eils; Sara Hadzibegovic; Alessia Lena; Bettina Heidecker; Thore Bürgel; Jakob Steinfeldt; Christine Goffinet; Florian Kurth; Martin Witzenrath; Maria Theresa Völker; Sarah Dorothea Müller; Uwe Gerd Liebert; Naveed Ishaque; Lars Kaderali; Leif-Erik Sander; Christian Drosten; Sven Laudi; Roland Eils; Christian Conrad; Ulf Landmesser; Irina Lehmann
Journal:  Nat Biotechnol       Date:  2020-12-24       Impact factor: 54.908

2.  Genetic variability in COVID-19-related genes in the Brazilian population.

Authors:  Rodrigo Secolin; Tânia K de Araujo; Marina C Gonsales; Cristiane S Rocha; Michel Naslavsky; Luiz De Marco; Maria A C Bicalho; Vinicius L Vazquez; Mayana Zatz; Wilson A Silva; Iscia Lopes-Cendes
Journal:  Hum Genome Var       Date:  2021-04-02

3.  The quest to find genes that drive severe COVID.

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Review 4.  Interferon therapy in patients with SARS, MERS, and COVID-19: A systematic review and meta-analysis of clinical studies.

Authors:  Kiarash Saleki; Shakila Yaribash; Mohammad Banazadeh; Ehsan Hajihosseinlou; Mahdi Gouravani; Amene Saghazadeh; Nima Rezaei
Journal:  Eur J Pharmacol       Date:  2021-06-12       Impact factor: 4.432

5.  Interferon deficiency can lead to severe COVID.

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Journal:  Nature       Date:  2020-11       Impact factor: 49.962

Review 6.  Role of Host Immune and Inflammatory Responses in COVID-19 Cases with Underlying Primary Immunodeficiency: A Review.

Authors:  Benjamin M Liu; Harry R Hill
Journal:  J Interferon Cytokine Res       Date:  2020-12       Impact factor: 2.607

Review 7.  COVID-19: The Emerging Immunopathological Determinants for Recovery or Death.

Authors:  Tanveer Ahmad; Rituparna Chaudhuri; Mohan C Joshi; Ahmad Almatroudi; Arshad Husain Rahmani; Syed Mansoor Ali
Journal:  Front Microbiol       Date:  2020-12-01       Impact factor: 5.640

Review 8.  Virus Caused Imbalance of Type I IFN Responses and Inflammation in COVID-19.

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Journal:  Front Immunol       Date:  2021-04-12       Impact factor: 7.561

Review 9.  The single-cell landscape of immunological responses of CD4+ T cells in HIV versus severe acute respiratory syndrome coronavirus 2.

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10.  Human genetic variants identified that affect COVID susceptibility and severity.

Authors:  Samira Asgari; Lionel A Pousaz
Journal:  Nature       Date:  2021-12       Impact factor: 49.962

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