Literature DB >> 33633715

Discovery, Bioactivity Evaluation, Biosynthetic Gene Cluster Identification, and Heterologous Expression of Novel Albofungin Derivatives.

Weiyi She1,2,3, Wenkang Ye1,2,3, Aifang Cheng2,3, Xin Liu2,3, Jianwei Tang2,3, Yi Lan2,3, Feng Chen4, Pei-Yuan Qian2,3.   

Abstract

The crude extract of Streptomyces chrestomyceticus exhibited strong and broad activities against most "ESKAPE pathogens." We conducted a comprehensive chemical investigation for secondary metabolites from the S. chrestomyceticus strain and identified two novel albofungin (alb) derivatives, i.e., albofungins A (1) and B (2), along with two known compounds, i.e., albofungin (3) and chloroalbofungin (4). The chemical structures of the novel compounds were elucidated using HRMS, 1D and 2D NMR, and electronic circular dichroism spectroscopy. The draft genome of S. chrestomyceticus was sequenced, and a 72 kb albofungin (alb) gene cluster with 72 open reading frames encoding type II polyketide synthases (PKSs), regulators, and transporters, and tailoring enzymes were identified using bioinformatics analysis. The alb gene cluster was confirmed using the heterologous expression in Streptomyces coelicolor, which successfully produced the compounds 3 and 4. Furthermore, compounds 1-4 displayed remarkable activities against Gram-positive bacteria and antitumor activities toward various cancer cells. Notably, compounds 1 and 3 showed potent activities against Gram-negative pathogenic bacteria. The terminal deoxynucleotidyl transferase (dUTP) nick-end labeling and flow cytometry analysis verified that compound 1 inhibited cancer cell proliferation by inducing cellular apoptosis. These results indicated that albofungins might be potential candidates for the development of antibiotics and antitumor drugs.
Copyright © 2021 She, Ye, Cheng, Liu, Tang, Lan, Chen and Qian.

Entities:  

Keywords:  actinobacteria; albofungin biosynthetic gene cluster; antibiotics; antitumor; genome mining; heterologous expression; polycyclic xanthones

Year:  2021        PMID: 33633715      PMCID: PMC7902042          DOI: 10.3389/fmicb.2021.635268

Source DB:  PubMed          Journal:  Front Microbiol        ISSN: 1664-302X            Impact factor:   5.640


  32 in total

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Authors:  Meizhong Luo; Rod A Wing
Journal:  Methods Mol Biol       Date:  2003

2.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

3.  Federal funding for the study of antimicrobial resistance in nosocomial pathogens: no ESKAPE.

Authors:  Louis B Rice
Journal:  J Infect Dis       Date:  2008-04-15       Impact factor: 5.226

4.  Albofungin and chloroalbofungin: antibiotic crystals with 2D but not 3D isostructurality.

Authors:  Wenkang Ye; Weiyi She; Herman H Y Sung; Peiyuan Qian; Ian D Williams
Journal:  Acta Crystallogr C Struct Chem       Date:  2020-11-25       Impact factor: 1.172

Review 5.  Polyketide biosynthesis beyond the type I, II and III polyketide synthase paradigms.

Authors:  Ben Shen
Journal:  Curr Opin Chem Biol       Date:  2003-04       Impact factor: 8.822

Review 6.  Polycyclic xanthone natural products: structure, biological activity and chemical synthesis.

Authors:  Dana K Winter; David L Sloman; John A Porco
Journal:  Nat Prod Rep       Date:  2013-01-21       Impact factor: 13.423

7.  antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.

Authors:  Marnix H Medema; Kai Blin; Peter Cimermancic; Victor de Jager; Piotr Zakrzewski; Michael A Fischbach; Tilmann Weber; Eriko Takano; Rainer Breitling
Journal:  Nucleic Acids Res       Date:  2011-06-14       Impact factor: 16.971

8.  CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.

Authors:  Donovan H Parks; Michael Imelfort; Connor T Skennerton; Philip Hugenholtz; Gene W Tyson
Journal:  Genome Res       Date:  2015-05-14       Impact factor: 9.043

Review 9.  Biosynthesis of Polyketides in Streptomyces.

Authors:  Chandra Risdian; Tjandrawati Mozef; Joachim Wink
Journal:  Microorganisms       Date:  2019-05-06

10.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

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  4 in total

1.  Proteomining-Based Elucidation of Natural Product Biosynthetic Pathways in Streptomyces.

Authors:  Darwin Linardi; Weiyi She; Qian Zhang; Yi Yu; Pei-Yuan Qian; Henry Lam
Journal:  Front Microbiol       Date:  2022-07-11       Impact factor: 6.064

2.  Discovery, Yield Improvement, and Application in Marine Coatings of Potent Antifouling Compounds Albofungins Targeting Multiple Fouling Organisms.

Authors:  Weiyi She; Wei Ye; Aifang Cheng; Wenkang Ye; Chunfeng Ma; Ruojun Wang; Jinping Cheng; Xuan Liu; Yujing Yuan; Sin Yu Chik; Jessie James Limlingan Malit; Yanhong Lu; Feng Chen; Pei-Yuan Qian
Journal:  Front Microbiol       Date:  2022-07-07       Impact factor: 6.064

Review 3.  Isolation, Biosynthesis, and Biological Activity of Polycyclic Xanthones From Actinomycetes.

Authors:  Hui-Qing Yu; Gang Li; Hong-Xiang Lou
Journal:  Front Microbiol       Date:  2022-07-13       Impact factor: 6.064

4.  Genetic and Biochemical Characterization of Halogenation and Drug Transportation Genes Encoded in the Albofungin Biosynthetic Gene Cluster.

Authors:  Zhe-Chong Wang; I-Wen Lo; Kuan-Hung Lin; An Ning Cheng; Saeid Malek Zadeh; Yen-Hua Huang; Tsung-Lin Li
Journal:  Appl Environ Microbiol       Date:  2022-08-24       Impact factor: 5.005

  4 in total

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