Literature DB >> 14501055

An improved method for plant BAC library construction.

Meizhong Luo1, Rod A Wing.   

Abstract

Large genomic DNA insert-containing libraries are required as critical tools for physical mapping, positional cloning, and genome sequencing of complex genomes. The bacterial artificial chromosome (BAC) cloning system has become a dominant system over others to clone large genomic DNA inserts. As the costs of positional cloning, physical mapping, and genome sequencing continuously decrease, there is an increasing demand for high-quality deep-coverage large insert BAC libraries. In our laboratory, we have constructed many high-quality deep-coverage large insert BAC libraries including arabidopsis, manocot and dicot crop plants, and plant pathogens. Here, we present the protocol used in our laboratory to construct BAC libraries.

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Year:  2003        PMID: 14501055     DOI: 10.1385/1-59259-413-1:3

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  47 in total

1.  Formation of an Angular Aromatic Polyketide from a Linear Anthrene Precursor via Oxidative Rearrangement.

Authors:  Guixi Gao; Xiangyang Liu; Min Xu; Yemin Wang; Fei Zhang; Lijun Xu; Jin Lv; Qingshan Long; Qianjin Kang; Hong-Yu Ou; Ying Wang; Jürgen Rohr; Zixin Deng; Ming Jiang; Shuangjun Lin; Meifeng Tao
Journal:  Cell Chem Biol       Date:  2017-07-14       Impact factor: 8.116

2.  Characterization of rubber tree microRNA in phytohormone response using large genomic DNA libraries, promoter sequence and gene expression analysis.

Authors:  Supanath Kanjanawattanawong; Sithichoke Tangphatsornruang; Kanokporn Triwitayakorn; Panthita Ruang-areerate; Duangjai Sangsrakru; Supannee Poopear; Suthasinee Somyong; Jarunya Narangajavana
Journal:  Mol Genet Genomics       Date:  2014-05-26       Impact factor: 3.291

3.  The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza.

Authors:  Jetty S S Ammiraju; Meizhong Luo; José L Goicoechea; Wenming Wang; Dave Kudrna; Christopher Mueller; Jayson Talag; HyeRan Kim; Nicholas B Sisneros; Barbara Blackmon; Eric Fang; Jeffery B Tomkins; Darshan Brar; David MacKill; Susan McCouch; Nori Kurata; Georgina Lambert; David W Galbraith; K Arumuganathan; Kiran Rao; Jason G Walling; Navdeep Gill; Yeisoo Yu; Phillip SanMiguel; Carol Soderlund; Scott Jackson; Rod A Wing
Journal:  Genome Res       Date:  2005-12-12       Impact factor: 9.043

4.  The 19 genomes of Drosophila: a BAC library resource for genus-wide and genome-scale comparative evolutionary research.

Authors:  Xiang Song; Jose Luis Goicoechea; Jetty S S Ammiraju; Meizhong Luo; Ruifeng He; Jinke Lin; So-Jeong Lee; Nicholas Sisneros; Tom Watts; David A Kudrna; Wolfgang Golser; Elizabeth Ashley; Kristi Collura; Michele Braidotti; Yeisoo Yu; Luciano M Matzkin; Bryant F McAllister; Therese Ann Markow; Rod A Wing
Journal:  Genetics       Date:  2011-02-14       Impact factor: 4.562

5.  Transformation of rice with large maize genomic DNA fragments containing high content repetitive sequences.

Authors:  Yafei Wang; Haiyang Zeng; Xu Zhou; Fei Huang; Wei Peng; Lin Liu; Wentao Xiong; Xue Shi; Meizhong Luo
Journal:  Plant Cell Rep       Date:  2015-02-21       Impact factor: 4.570

6.  New strategy for isolating novel nematicidal crystal protein genes from Bacillus thuringiensis strain YBT-1518.

Authors:  Suxia Guo; Mei Liu; Donghai Peng; Sisi Ji; Pengxia Wang; Ziniu Yu; Ming Sun
Journal:  Appl Environ Microbiol       Date:  2008-09-26       Impact factor: 4.792

7.  An integrated physical, genetic and cytogenetic map of Brachypodium distachyon, a model system for grass research.

Authors:  Melanie Febrer; Jose Luis Goicoechea; Jonathan Wright; Neil McKenzie; Xiang Song; Jinke Lin; Kristi Collura; Marina Wissotski; Yeisoo Yu; Jetty S S Ammiraju; Elzbieta Wolny; Dominika Idziak; Alexander Betekhtin; Dave Kudrna; Robert Hasterok; Rod A Wing; Michael W Bevan
Journal:  PLoS One       Date:  2010-10-18       Impact factor: 3.240

8.  Functional Genome Mining for Metabolites Encoded by Large Gene Clusters through Heterologous Expression of a Whole-Genome Bacterial Artificial Chromosome Library in Streptomyces spp.

Authors:  Min Xu; Yemin Wang; Zhilong Zhao; Guixi Gao; Sheng-Xiong Huang; Qianjin Kang; Xinyi He; Shuangjun Lin; Xiuhua Pang; Zixin Deng; Meifeng Tao
Journal:  Appl Environ Microbiol       Date:  2016-09-16       Impact factor: 4.792

9.  Global genomic diversity of Oryza sativa varieties revealed by comparative physical mapping.

Authors:  Xiaoming Wang; David A Kudrna; Yonglong Pan; Hao Wang; Lin Liu; Haiyan Lin; Jianwei Zhang; Xiang Song; Jose Luis Goicoechea; Rod A Wing; Qifa Zhang; Meizhong Luo
Journal:  Genetics       Date:  2014-01-14       Impact factor: 4.562

10.  Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains.

Authors:  William Nelson; Meizhong Luo; Jianxin Ma; Matt Estep; James Estill; Ruifeng He; Jayson Talag; Nicholas Sisneros; David Kudrna; HyeRan Kim; Jetty S S Ammiraju; Kristi Collura; Arvind K Bharti; Joachim Messing; Rod A Wing; Phillip SanMiguel; Jeffrey L Bennetzen; Carol Soderlund
Journal:  BMC Genomics       Date:  2008-12-19       Impact factor: 3.969

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