Literature DB >> 33594978

Theory for the optimal detection of time-varying signals in cellular sensing systems.

Giulia Malaguti1, Pieter Rein Ten Wolde1.   

Abstract

Living cells often need to measure chemical concentrations that vary in time, yet how accurately they can do so is poorly understood. Here, we present a theory that fully specifies, without any adjustable parameters, the optimal design of a canonical sensing system in terms of two elementary design principles: (1) there exists an optimal integration time, which is determined by the input statistics and the number of receptors; and (2) in the optimally designed system, the number of independent concentration measurements as set by the number of receptors and the optimal integration time equals the number of readout molecules that store these measurements and equals the work to store these measurements reliably; no resource is then in excess and hence wasted. Applying our theory to the Escherichia coli chemotaxis system indicates that its integration time is not only optimal for sensing shallow gradients but also necessary to enable navigation in these gradients.
© 2021, Malaguti and ten Wolde.

Entities:  

Keywords:  E. coli; information transmission; modelling; physics of living systems; sensing

Mesh:

Year:  2021        PMID: 33594978      PMCID: PMC7946427          DOI: 10.7554/eLife.62574

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  55 in total

1.  Physical limits on cellular sensing of spatial gradients.

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2.  Quantifying noise levels of intercellular signals.

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3.  Receptor noise and directional sensing in eukaryotic chemotaxis.

Authors:  Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev Lett       Date:  2008-06-02       Impact factor: 9.161

Review 4.  Information transmission in genetic regulatory networks: a review.

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5.  Physics of chemoreception.

Authors:  H C Berg; E M Purcell
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6.  Energetic costs of cellular computation.

Authors:  Pankaj Mehta; David J Schwab
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-08       Impact factor: 11.205

7.  Gain control in molecular information processing: lessons from neuroscience.

Authors:  Ilya Nemenman
Journal:  Phys Biol       Date:  2012-04-04       Impact factor: 2.583

8.  Information transduction capacity of noisy biochemical signaling networks.

Authors:  Raymond Cheong; Alex Rhee; Chiaochun Joanne Wang; Ilya Nemenman; Andre Levchenko
Journal:  Science       Date:  2011-09-15       Impact factor: 47.728

9.  Free energy cost of reducing noise while maintaining a high sensitivity.

Authors:  Pablo Sartori; Yuhai Tu
Journal:  Phys Rev Lett       Date:  2015-09-08       Impact factor: 9.161

10.  Feedback between motion and sensation provides nonlinear boost in run-and-tumble navigation.

Authors:  Junjiajia Long; Steven W Zucker; Thierry Emonet
Journal:  PLoS Comput Biol       Date:  2017-03-06       Impact factor: 4.475

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  2 in total

Review 1.  A synthetic synthesis to explore animal evolution and development.

Authors:  Mindy Liu Perkins; Lautaro Gandara; Justin Crocker
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2022-05-30       Impact factor: 6.671

2.  Evolution of Complex Regulation for Cell-Cycle Control.

Authors:  Samuel H A von der Dunk; Berend Snel; Paulien Hogeweg
Journal:  Genome Biol Evol       Date:  2022-05-03       Impact factor: 4.065

  2 in total

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