Literature DB >> 26406857

Free energy cost of reducing noise while maintaining a high sensitivity.

Pablo Sartori1, Yuhai Tu2.   

Abstract

Living systems need to be highly responsive, and also to keep fluctuations low. These goals are incompatible in equilibrium systems due to the fluctuation dissipation theorem (FDT). Here, we show that biological sensory systems, driven far from equilibrium by free energy consumption, can reduce their intrinsic fluctuations while maintaining high responsiveness. By developing a continuum theory of the E. coli chemotaxis pathway, we demonstrate that adaptation can be understood as a nonequilibrium phase transition controlled by free energy dissipation, and it is characterized by a breaking of the FDT. We show that the maximum response at short time is enhanced by free energy dissipation. At the same time, the low frequency fluctuations and the adaptation error decrease with the free energy dissipation algebraically and exponentially, respectively.

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Year:  2015        PMID: 26406857      PMCID: PMC4955832          DOI: 10.1103/PhysRevLett.115.118102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  21 in total

1.  Comparison of a hair bundle's spontaneous oscillations with its response to mechanical stimulation reveals the underlying active process.

Authors:  P Martin; A J Hudspeth; F Jülicher
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-27       Impact factor: 11.205

2.  Energy transduction of isothermal ratchets: generic aspects and specific examples close to and far from equilibrium.

Authors:  A Parmeggiani; F Jülicher; A Ajdari; J Prost
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1999-08

Review 3.  Energy limitation as a selective pressure on the evolution of sensory systems.

Authors:  Jeremy E Niven; Simon B Laughlin
Journal:  J Exp Biol       Date:  2008-06       Impact factor: 3.312

4.  Robustness in simple biochemical networks.

Authors:  N Barkai; S Leibler
Journal:  Nature       Date:  1997-06-26       Impact factor: 49.962

5.  Adaptation kinetics in bacterial chemotaxis.

Authors:  S M Block; J E Segall; H C Berg
Journal:  J Bacteriol       Date:  1983-04       Impact factor: 3.490

6.  Noise filtering strategies in adaptive biochemical signaling networks: Application to E. coli chemotaxis.

Authors:  Pablo Sartori; Yuhai Tu
Journal:  J Stat Phys       Date:  2011-04-01       Impact factor: 1.548

7.  Modeling the chemotactic response of Escherichia coli to time-varying stimuli.

Authors:  Yuhai Tu; Thomas S Shimizu; Howard C Berg
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-23       Impact factor: 11.205

Review 8.  Quantitative modeling of bacterial chemotaxis: signal amplification and accurate adaptation.

Authors:  Yuhai Tu
Journal:  Annu Rev Biophys       Date:  2013-02-28       Impact factor: 12.981

9.  Logarithmic sensing in Escherichia coli bacterial chemotaxis.

Authors:  Yevgeniy V Kalinin; Lili Jiang; Yuhai Tu; Mingming Wu
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

10.  The energy-speed-accuracy tradeoff in sensory adaptation.

Authors:  Ganhui Lan; Pablo Sartori; Silke Neumann; Victor Sourjik; Yuhai Tu
Journal:  Nat Phys       Date:  2012-03-25       Impact factor: 20.034

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  12 in total

Review 1.  Information processing in bacteria: memory, computation, and statistical physics: a key issues review.

Authors:  Ganhui Lan; Yuhai Tu
Journal:  Rep Prog Phys       Date:  2016-04-08

2.  Multiple sources of slow activity fluctuations in a bacterial chemosensory network.

Authors:  Remy Colin; Christelle Rosazza; Ady Vaknin; Victor Sourjik
Journal:  Elife       Date:  2017-12-12       Impact factor: 8.140

3.  Adaptation of Living Systems.

Authors:  Yuhai Tu; Wouter-Jan Rappel
Journal:  Annu Rev Condens Matter Phys       Date:  2017-12-08       Impact factor: 16.109

4.  Network Topologies That Can Achieve Dual Function of Adaptation and Noise Attenuation.

Authors:  Lingxia Qiao; Wei Zhao; Chao Tang; Qing Nie; Lei Zhang
Journal:  Cell Syst       Date:  2019-09-18       Impact factor: 10.304

Review 5.  Behavioral Variability and Phenotypic Diversity in Bacterial Chemotaxis.

Authors:  Adam James Waite; Nicholas W Frankel; Thierry Emonet
Journal:  Annu Rev Biophys       Date:  2018-04-04       Impact factor: 12.981

6.  Improved bounds on entropy production in living systems.

Authors:  Dominic J Skinner; Jörn Dunkel
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-04       Impact factor: 11.205

7.  Topologically protected modes in non-equilibrium stochastic systems.

Authors:  Arvind Murugan; Suriyanarayanan Vaikuntanathan
Journal:  Nat Commun       Date:  2017-01-10       Impact factor: 14.919

8.  Design principles for enhancing phase sensitivity and suppressing phase fluctuations simultaneously in biochemical oscillatory systems.

Authors:  Chenyi Fei; Yuansheng Cao; Qi Ouyang; Yuhai Tu
Journal:  Nat Commun       Date:  2018-04-12       Impact factor: 14.919

9.  The free-energy cost of interaction between DNA loops.

Authors:  Lifang Huang; Peijiang Liu; Zhanjiang Yuan; Tianshou Zhou; Jianshe Yu
Journal:  Sci Rep       Date:  2017-10-03       Impact factor: 4.379

10.  Sequential modification of bacterial chemoreceptors is key for achieving both accurate adaptation and high gain.

Authors:  Bernardo A Mello; Anderson B Beserra; Yuhai Tu
Journal:  Nat Commun       Date:  2020-06-08       Impact factor: 14.919

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