Literature DB >> 33579919

Cross-cancer evaluation of polygenic risk scores for 16 cancer types in two large cohorts.

Rebecca E Graff1,2,3, Taylor B Cavazos4, Khanh K Thai2, Linda Kachuri1, Sara R Rashkin1, Joshua D Hoffman1, Stacey E Alexeeff2, Maruta Blatchins2, Travis J Meyers1, Lancelote Leong1, Caroline G Tai1, Nima C Emami1,4, Douglas A Corley2, Lawrence H Kushi2, Elad Ziv3,5,6, Stephen K Van Den Eeden2,7, Eric Jorgenson2, Thomas J Hoffmann1,2,5, Laurel A Habel2, John S Witte8,9,10,11, Lori C Sakoda12,13.   

Abstract

Even distinct cancer types share biological hallmarks. Here, we investigate polygenic risk score (PRS)-specific pleiotropy across 16 cancers in European ancestry individuals from the Genetic Epidemiology Research on Adult Health and Aging cohort (16,012 cases, 50,552 controls) and UK Biobank (48,969 cases, 359,802 controls). Within cohorts, each PRS is evaluated in multivariable logistic regression models against all other cancer types. Results are then meta-analyzed across cohorts. Ten positive and one inverse cross-cancer associations are found after multiple testing correction. Two pairs show bidirectional associations; the melanoma PRS is positively associated with oral cavity/pharyngeal cancer and vice versa, whereas the lung cancer PRS is positively associated with oral cavity/pharyngeal cancer, and the oral cavity/pharyngeal cancer PRS is inversely associated with lung cancer. Overall, we validate known, and uncover previously unreported, patterns of pleiotropy that have the potential to inform investigations of risk prediction, shared etiology, and precision cancer prevention strategies.

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Year:  2021        PMID: 33579919      PMCID: PMC7880989          DOI: 10.1038/s41467-021-21288-z

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  68 in total

1.  Identification of Pleiotropic Cancer Susceptibility Variants from Genome-Wide Association Studies Reveals Functional Characteristics.

Authors:  Yi-Hsuan Wu; Rebecca E Graff; Michael N Passarelli; Joshua D Hoffman; Elad Ziv; Thomas J Hoffmann; John S Witte
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2017-11-17       Impact factor: 4.254

2.  Cancer risks in BRCA2 mutation carriers.

Authors: 
Journal:  J Natl Cancer Inst       Date:  1999-08-04       Impact factor: 13.506

3.  Pleiotropic analysis of cancer risk loci on esophageal adenocarcinoma risk.

Authors:  Eunjung Lee; Daniel O Stram; Weronica E Ek; Lynn E Onstad; Stuart MacGregor; Puya Gharahkhani; Weimin Ye; Jesper Lagergren; Nicholas J Shaheen; Liam J Murray; Laura J Hardie; Marilie D Gammon; Wong-Ho Chow; Harvey A Risch; Douglas A Corley; David M Levine; David C Whiteman; Leslie Bernstein; Nigel C Bird; Thomas L Vaughan; Anna H Wu
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2015-09-12       Impact factor: 4.254

4.  Pleiotropic effects of genetic risk variants for other cancers on colorectal cancer risk: PAGE, GECCO and CCFR consortia.

Authors:  Iona Cheng; Jonathan M Kocarnik; Logan Dumitrescu; Noralane M Lindor; Jenny Chang-Claude; Christy L Avery; Christian P Caberto; Shelly-Ann Love; Martha L Slattery; Andrew T Chan; John A Baron; Lucia A Hindorff; Sungshim Lani Park; Fredrick R Schumacher; Michael Hoffmeister; Peter Kraft; Anne M Butler; David J Duggan; Lifang Hou; Chris S Carlson; Kristine R Monroe; Yi Lin; Cara L Carty; Sue Mann; Jing Ma; Edward L Giovannucci; Charles S Fuchs; Polly A Newcomb; Mark A Jenkins; John L Hopper; Robert W Haile; David V Conti; Peter T Campbell; John D Potter; Bette J Caan; Robert E Schoen; Richard B Hayes; Stephen J Chanock; Sonja I Berndt; Sebastien Küry; Stephane Bézieau; Jose Luis Ambite; Gowri Kumaraguruparan; Danielle M Richardson; Robert J Goodloe; Holli H Dilks; Paxton Baker; Brent W Zanke; Mathieu Lemire; Steven Gallinger; Li Hsu; Shuo Jiao; Tabitha A Harrison; Daniela Seminara; Christopher A Haiman; Charles Kooperberg; Lynne R Wilkens; Carolyn M Hutter; Emily White; Dana C Crawford; Gerardo Heiss; Thomas J Hudson; Hermann Brenner; William S Bush; Graham Casey; Loïc Le Marchand; Ulrike Peters
Journal:  Gut       Date:  2013-08-09       Impact factor: 23.059

5.  Evaluation of associations between genetically predicted circulating protein biomarkers and breast cancer risk.

Authors:  Xiang Shu; Jiandong Bao; Lang Wu; Jirong Long; Xiao-Ou Shu; Xingyi Guo; Yaohua Yang; Kyriaki Michailidou; Manjeet K Bolla; Qin Wang; Joe Dennis; Irene L Andrulis; Jose E Castelao; Thilo Dörk; Manuela Gago-Dominguez; Montserrat García-Closas; Graham G Giles; Artitaya Lophatananon; Kenneth Muir; Håkan Olsson; Gadi Rennert; Emmanouil Saloustros; Rodney J Scott; Melissa C Southey; Paul D P Pharoah; Roger L Milne; Peter Kraft; Jacques Simard; Douglas F Easton; Wei Zheng
Journal:  Int J Cancer       Date:  2019-07-16       Impact factor: 7.396

6.  A genome-wide pleiotropy scan for prostate cancer risk.

Authors:  Orestis A Panagiotou; Ruth C Travis; Daniele Campa; Sonja I Berndt; Sara Lindstrom; Peter Kraft; Fredrick R Schumacher; Afshan Siddiq; Stefania I Papatheodorou; Janet L Stanford; Demetrius Albanes; Jarmo Virtamo; Stephanie J Weinstein; W Ryan Diver; Susan M Gapstur; Victoria L Stevens; Heiner Boeing; H Bas Bueno-de-Mesquita; Aurelio Barricarte Gurrea; Rudolf Kaaks; Kay-Tee Khaw; Vittorio Krogh; Kim Overvad; Elio Riboli; Dimitrios Trichopoulos; Edward Giovannucci; Meir Stampfer; Christopher Haiman; Brian Henderson; Loic Le Marchand; J Michael Gaziano; David J Hunter; Stella Koutros; Meredith Yeager; Robert N Hoover; Stephen J Chanock; Sholom Wacholder; Timothy J Key; Konstantinos K Tsilidis
Journal:  Eur Urol       Date:  2014-09-30       Impact factor: 20.096

7.  GWAS of follicular lymphoma reveals allelic heterogeneity at 6p21.32 and suggests shared genetic susceptibility with diffuse large B-cell lymphoma.

Authors:  Karin E Smedby; Jia Nee Foo; Christine F Skibola; Hatef Darabi; Lucia Conde; Henrik Hjalgrim; Vikrant Kumar; Ellen T Chang; Nathaniel Rothman; James R Cerhan; Angela R Brooks-Wilson; Emil Rehnberg; Ishak D Irwan; Lars P Ryder; Peter N Brown; Paige M Bracci; Luz Agana; Jacques Riby; Wendy Cozen; Scott Davis; Patricia Hartge; Lindsay M Morton; Richard K Severson; Sophia S Wang; Susan L Slager; Zachary S Fredericksen; Anne J Novak; Neil E Kay; Thomas M Habermann; Bruce Armstrong; Anne Kricker; Sam Milliken; Mark P Purdue; Claire M Vajdic; Peter Boyle; Qing Lan; Shelia H Zahm; Yawei Zhang; Tongzhang Zheng; Stephen Leach; John J Spinelli; Martyn T Smith; Stephen J Chanock; Leonid Padyukov; Lars Alfredsson; Lars Klareskog; Bengt Glimelius; Mads Melbye; Edison T Liu; Hans-Olov Adami; Keith Humphreys; Jianjun Liu
Journal:  PLoS Genet       Date:  2011-04-21       Impact factor: 5.917

8.  Quantifying the Genetic Correlation between Multiple Cancer Types.

Authors:  Sara Lindström; Hilary Finucane; Brendan Bulik-Sullivan; Fredrick R Schumacher; Christopher I Amos; Rayjean J Hung; Kristin Rand; Stephen B Gruber; David Conti; Jennifer B Permuth; Hui-Yi Lin; Ellen L Goode; Thomas A Sellers; Laufey T Amundadottir; Rachael Stolzenberg-Solomon; Alison Klein; Gloria Petersen; Harvey Risch; Brian Wolpin; Li Hsu; Jeroen R Huyghe; Jenny Chang-Claude; Andrew Chan; Sonja Berndt; Rosalind Eeles; Douglas Easton; Christopher A Haiman; David J Hunter; Benjamin Neale; Alkes L Price; Peter Kraft
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2017-06-21       Impact factor: 4.254

9.  Cross-cancer pleiotropic analysis of endometrial cancer: PAGE and E2C2 consortia.

Authors:  Veronica Wendy Setiawan; Fredrick Schumacher; Jennifer Prescott; Jeffrey Haessler; Jennifer Malinowski; Nicolas Wentzensen; Hannah Yang; Stephen Chanock; Louise Brinton; Patricia Hartge; Jolanta Lissowska; S Lani Park; Iona Cheng; William S Bush; Dana C Crawford; Giske Ursin; Pamela Horn-Ross; Leslie Bernstein; Lingeng Lu; Harvey Risch; Herbert Yu; Lori C Sakoda; Jennifer Doherty; Chu Chen; Rebecca Jackson; Shagufta Yasmeen; Michele Cote; Jonathan M Kocarnik; Ulrike Peters; Peter Kraft; Immaculata De Vivo; Christopher A Haiman; Charles Kooperberg; Loic Le Marchand
Journal:  Carcinogenesis       Date:  2014-05-15       Impact factor: 4.741

10.  Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.

Authors:  Sara R Rashkin; Rebecca E Graff; Linda Kachuri; Khanh K Thai; Stacey E Alexeeff; Maruta A Blatchins; Taylor B Cavazos; Douglas A Corley; Nima C Emami; Joshua D Hoffman; Eric Jorgenson; Lawrence H Kushi; Travis J Meyers; Stephen K Van Den Eeden; Elad Ziv; Laurel A Habel; Thomas J Hoffmann; Lori C Sakoda; John S Witte
Journal:  Nat Commun       Date:  2020-09-04       Impact factor: 14.919

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  12 in total

1.  Simple Linear Cancer Risk Prediction Models With Novel Features Outperform Complex Approaches.

Authors:  Scott Kulm; Lior Kofman; Jason Mezey; Olivier Elemento
Journal:  JCO Clin Cancer Inform       Date:  2022-02

2.  PolarMorphism enables discovery of shared genetic variants across multiple traits from GWAS summary statistics.

Authors:  Joanna von Berg; Michelle Ten Dam; Sander W van der Laan; Jeroen de Ridder
Journal:  Bioinformatics       Date:  2022-06-24       Impact factor: 6.931

Review 3.  Are polygenic risk scores ready for the cancer clinic?-a perspective.

Authors:  Robert J Klein; Zeynep H Gümüş
Journal:  Transl Lung Cancer Res       Date:  2022-05

4.  Investigating the effect of sexual behaviour on oropharyngeal cancer risk: a methodological assessment of Mendelian randomization.

Authors:  Mark Gormley; Tom Dudding; Linda Kachuri; Kimberley Burrows; Amanda H W Chong; Richard M Martin; Steven J Thomas; Jessica Tyrrell; Andrew R Ness; Paul Brennan; Marcus R Munafò; Miranda Pring; Stefania Boccia; Andrew F Olshan; Brenda Diergaarde; Rayjean J Hung; Geoffrey Liu; Eloiza H Tajara; Patricia Severino; Tatiana N Toporcov; Martin Lacko; Tim Waterboer; Nicole Brenner; George Davey Smith; Emma E Vincent; Rebecca C Richmond
Journal:  BMC Med       Date:  2022-01-31       Impact factor: 11.150

5.  Phenome-wide association study (PheWAS) of colorectal cancer risk SNP effects on health outcomes in UK Biobank.

Authors:  Xiaomeng Zhang; Xue Li; Yazhou He; Philip J Law; Susan M Farrington; Harry Campbell; Ian P M Tomlinson; Richard S Houlston; Malcolm G Dunlop; Maria Timofeeva; Evropi Theodoratou
Journal:  Br J Cancer       Date:  2021-12-15       Impact factor: 7.640

6.  Stability of polygenic scores across discovery genome-wide association studies.

Authors:  Laura M Schultz; Alison K Merikangas; Kosha Ruparel; Sébastien Jacquemont; David C Glahn; Raquel E Gur; Ran Barzilay; Laura Almasy
Journal:  HGG Adv       Date:  2022-01-21

7.  Prostate cancer polygenic risk score and prediction of lethal prostate cancer.

Authors:  Robert J Klein; Emily Vertosick; Dan Sjoberg; David Ulmert; Ann-Charlotte Rönn; Christel Häggström; Elin Thysell; Göran Hallmans; Anders Dahlin; Pär Stattin; Olle Melander; Andrew Vickers; Hans Lilja
Journal:  NPJ Precis Oncol       Date:  2022-04-08

8.  Multiethnic polygenic risk prediction in diverse populations through transfer learning.

Authors:  Peixin Tian; Tsai Hor Chan; Yong-Fei Wang; Wanling Yang; Guosheng Yin; Yan Dora Zhang
Journal:  Front Genet       Date:  2022-08-19       Impact factor: 4.772

9.  Performance of the Use of Genetic Information to Assess the Risk of Colorectal Cancer in the Basque Population.

Authors:  Koldo Garcia-Etxebarria; Ane Etxart; Maialen Barrero; Beatriz Nafria; Nerea Miren Segues Merino; Irati Romero-Garmendia; Andre Franke; Mauro D'Amato; Luis Bujanda
Journal:  Cancers (Basel)       Date:  2022-08-29       Impact factor: 6.575

10.  Associations of genetic susceptibility to 16 cancers with risk of breast cancer overall and by intrinsic subtypes.

Authors:  Jungyoon Choi; Guochong Jia; Wanqing Wen; Ran Tao; Jirong Long; Xiao-Ou Shu; Wei Zheng
Journal:  HGG Adv       Date:  2021-12-10
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